btjaden / Rockhopper
For computational analysis of bacterial RNA-seq data
☆10Updated 7 years ago
Alternatives and similar repositories for Rockhopper:
Users that are interested in Rockhopper are comparing it to the libraries listed below
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆20Updated last year
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated last year
- Quality control plotting for long reads☆10Updated 9 months ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research☆14Updated 3 weeks ago
- Command line tool to plot genomic coverage from a BAM file☆13Updated last year
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- An R package to infer and analyze synteny networks from protein sequences☆26Updated 2 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆22Updated 4 months ago
- ☆25Updated 3 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last week
- Simple script to generate whole-genome coverage plots☆18Updated 9 years ago
- genomic alignment similarity search tool☆19Updated 8 months ago
- Genome-Genome circle synteny☆23Updated last year
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Primer design from single genes to whole gene families for unlocking the tree of life☆12Updated 5 months ago
- A repository for the lessons and notebooks used for Binder tutorials☆13Updated 4 years ago
- a broadly applicable tool for automated gene identification and retrieval☆30Updated 2 months ago
- A simple tool to calculate reads number and total base count in FASTQ file☆20Updated 5 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆37Updated 3 months ago
- scripts for sequence and feature conversion, annotation, analysis ...☆27Updated 10 months ago
- Improved Phased Assembler☆28Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- ☆22Updated 5 years ago
- ☆14Updated 10 months ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 3 years ago
- A reference viral database (RVDB)☆26Updated 6 years ago