btjaden / RockhopperLinks
For computational analysis of bacterial RNA-seq data
☆12Updated 8 years ago
Alternatives and similar repositories for Rockhopper
Users that are interested in Rockhopper are comparing it to the libraries listed below
Sorting:
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆21Updated 2 years ago
- ☆11Updated 3 years ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆41Updated 5 years ago
- Quality control plotting for long reads☆10Updated last year
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆39Updated 2 years ago
- Transposable Elements MOvement detection using LOng reads☆22Updated 2 weeks ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated 11 months ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 4 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- ☆28Updated 3 years ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆61Updated 5 years ago
- Command line tool to plot genomic coverage from a BAM file☆14Updated 2 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆14Updated 4 years ago
- HyPhy standalone analyses☆46Updated 4 months ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- An R package to infer and analyze synteny networks from protein sequences☆30Updated 2 weeks ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- ☆22Updated 5 years ago
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 6 years ago
- Primer design from single genes to whole gene families for unlocking the tree of life☆16Updated 2 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 2 weeks ago
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14Updated 2 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- Program for finding horizontal gene transfer using BLAST result☆11Updated 2 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆61Updated 11 months ago