cchauve / HyAsPLinks
Hybrid Assembler for Plasmids
☆10Updated 3 years ago
Alternatives and similar repositories for HyAsP
Users that are interested in HyAsP are comparing it to the libraries listed below
Sorting:
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆11Updated 4 years ago
- Bacterial taxonomy construction and evaluation in R☆13Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆13Updated last year
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 2 weeks ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 5 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated last year
- Organism-specific interpretation of AMR genotypes☆14Updated last year
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated 2 weeks ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Finding regions of similarity between plasmids☆16Updated 2 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Updated last year
- Intra-species bacterial contamination detection☆25Updated 6 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- A script for comparing old vs new versions of genome annotations☆21Updated 2 years ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆14Updated last year
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆13Updated 11 months ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆14Updated 2 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆12Updated last year
- Resolving Species Level Classification Using Emu☆14Updated last year
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Updated 11 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago