Software for prediction of plasmid sequences in metagenomic assemblies
☆111Jun 28, 2021Updated 5 years ago
Alternatives and similar repositories for PlasFlow
Users that are interested in PlasFlow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/pl…☆33Jun 17, 2024Updated 2 years ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆182Apr 16, 2025Updated last year
- plasmidVerify: plasmid contig verification tool☆15Apr 30, 2020Updated 6 years ago
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆129Aug 6, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50May 18, 2026Updated 3 months ago
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆52Feb 2, 2021Updated 5 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆23Apr 20, 2023Updated 3 years ago
- Mass screening of contigs for antimicrobial and virulence genes☆507Jul 17, 2026Updated last month
- Bioinformatics tool to find integrons in bacterial genomes☆94May 7, 2025Updated last year
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆44Jul 23, 2021Updated 5 years ago
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated 6 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆620May 20, 2026Updated 3 months ago
- Plasmid exploration of bacterial genomes☆27Mar 2, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- hybrid assembly pipeline for bacterial genomes☆651Jul 29, 2026Updated last month
- Phigaro is a scalable command-line tool for predicting phages and prophages☆53Jan 8, 2024Updated 2 years ago
- Rapid haploid variant calling and core genome alignment☆591Dec 12, 2025Updated 8 months ago
- Rapid large-scale prokaryote pan genome analysis☆379Nov 3, 2025Updated 9 months ago
- ☆27Apr 20, 2023Updated 3 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Feb 17, 2021Updated 5 years ago
- ☆38Apr 15, 2024Updated 2 years ago
- Fast Whole-Genome Similarity (ANI) Estimation☆479Dec 16, 2025Updated 8 months ago
- Virus Identification By iteRative ANnoTation☆203Apr 15, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- ☆148Updated this week
- Pneumococcal Capsular Typing tool for NGS data☆18Apr 6, 2021Updated 5 years ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆388Updated this week
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆129Oct 30, 2023Updated 2 years ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆429May 20, 2026Updated 3 months ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆75Dec 28, 2019Updated 6 years ago
- Prediction of prophages from bacterial genomes☆88May 1, 2026Updated 4 months ago
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆44Apr 13, 2021Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A pipeline for running AMRfinderPlus and collating results into functional classes☆102Updated this week
- geNomad: Identification of mobile genetic elements☆329Mar 29, 2026Updated 5 months ago
- ☆22Sep 4, 2024Updated last year
- ☆13Sep 4, 2017Updated 8 years ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆235Jul 29, 2026Updated last month
- code repo for mobileOG-db☆50Jul 30, 2026Updated last month
- Pan-genome wide association studies☆223May 29, 2024Updated 2 years ago