labgem / PlaScopeLinks
Plasmid exploration of bacterial genomes
☆23Updated 3 years ago
Alternatives and similar repositories for PlaScope
Users that are interested in PlaScope are comparing it to the libraries listed below
Sorting:
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 4 years ago
- plasmidVerify: plasmid contig verification tool☆15Updated 5 years ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 6 months ago
- Order and orientation of complete bacterial genomes☆29Updated 5 months ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- Recombination-free trees☆64Updated 3 months ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated 3 months ago
- Calculate assocations between genes and traits☆29Updated 9 months ago
- ☆20Updated last year
- Whole genome core alignments from multiple draft genomes☆13Updated 9 years ago
- Gene Absence Presence Identification tool.☆27Updated 9 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆32Updated this week
- Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …☆13Updated 3 years ago
- Predict plasmids from uncorrected long read data☆41Updated last month
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 10 months ago
- A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/pl…☆32Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated 3 weeks ago
- Split Kmer Analysis☆66Updated 3 years ago
- Automated strain separation of low-complexity metagenomes☆53Updated 4 years ago
- zDB: comparative bacterial genomics made easy☆38Updated last week
- SeqSero2☆39Updated 2 months ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- all methods related to Enterobase☆44Updated last year