Plasmid exploration of bacterial genomes
☆26Mar 2, 2022Updated 4 years ago
Alternatives and similar repositories for PlaScope
Users that are interested in PlaScope are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆23Apr 20, 2023Updated 3 years ago
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 4 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- Plasmid Atlas - A web interface to browse for plasmids and their associated genes. Visit us at:☆21Nov 7, 2018Updated 7 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50May 18, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆44Jul 23, 2021Updated 5 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆102Updated this week
- A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/pl…☆33Jun 17, 2024Updated 2 years ago
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated 5 months ago
- Small utility script to submit genomes to PHASTER for phage detection☆26Oct 21, 2021Updated 4 years ago
- Phigaro is a scalable command-line tool for predicting phages and prophages☆53Jan 8, 2024Updated 2 years ago
- IslandPath standalone software☆38Nov 7, 2023Updated 2 years ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Apr 30, 2026Updated 3 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆34Jul 17, 2026Updated 3 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 5 years ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- ☆16May 21, 2026Updated 2 months ago
- Bioinformatics tool to find integrons in bacterial genomes☆94May 7, 2025Updated last year
- IS mapping software☆59Dec 3, 2021Updated 4 years ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆180Apr 16, 2025Updated last year
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Sep 30, 2025Updated 10 months ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆23Mar 8, 2024Updated 2 years ago
- Plasmid and antimicrobial resistance pipeline☆16Apr 30, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Software for prediction of plasmid sequences in metagenomic assemblies☆111Jun 28, 2021Updated 5 years ago
- Easy-to-use web application for visualization and comparison of genomes in Genbank file☆22May 27, 2022Updated 4 years ago
- ☆11Sep 16, 2020Updated 5 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆101Jul 8, 2022Updated 4 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆82Sep 20, 2023Updated 2 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆26Jul 10, 2026Updated last month
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆18Dec 29, 2022Updated 3 years ago
- Bacterial taxonomy construction and evaluation in R☆16Jan 30, 2024Updated 2 years ago
- A taxonomic classifier of plasmids☆29Jul 7, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- wrangling and model-free analysis of microbial growth curve data in R with gcplyr☆39May 8, 2026Updated 3 months ago
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆180Apr 22, 2026Updated 3 months ago
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Jul 11, 2026Updated 3 weeks ago
- whole genome MLST analysis☆55Jun 17, 2026Updated last month
- Parallel/Homoplasic SNP Finder☆20May 3, 2023Updated 3 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆27Jul 13, 2023Updated 3 years ago
- plasmidVerify: plasmid contig verification tool☆15Apr 30, 2020Updated 6 years ago