laxeye / zgaLinks
ZGA prokaryotic genome assembly and annotation pipeline
☆13Updated last year
Alternatives and similar repositories for zga
Users that are interested in zga are comparing it to the libraries listed below
Sorting:
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 3 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 3 weeks ago
- A script for comparing old vs new versions of genome annotations☆22Updated 2 years ago
- Bacterial GWAS analysis☆46Updated last month
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆37Updated 2 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- Discover and annotate the virome☆54Updated last month
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆10Updated 2 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year
- MAG Circularization Method☆32Updated last month
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆26Updated 3 weeks ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- Calculate assocations between genes and traits☆29Updated 9 months ago
- ☆24Updated 10 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆53Updated 3 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 7 months ago
- Genome-Genome circle synteny☆25Updated 2 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Gene Absence Presence Identification tool.☆27Updated 8 months ago
- Genome size estimation from long read overlaps☆74Updated last week
- Strain-level haplotyping for metagenomes with short or long-reads.☆59Updated 8 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Updated last year