ZGA prokaryotic genome assembly and annotation pipeline
☆13Sep 13, 2024Updated last year
Alternatives and similar repositories for zga
Users that are interested in zga are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆15Apr 4, 2026Updated last month
- plasmidVerify: plasmid contig verification tool☆15Apr 30, 2020Updated 6 years ago
- Bacterial taxonomy construction and evaluation in R☆16Jan 30, 2024Updated 2 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated 2 years ago
- viralVerify: viral contig verification tool☆75Feb 19, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Novo&Stitch is a genome assembly reconciliation tool based on optical map.☆10Oct 21, 2019Updated 6 years ago
- This is a repository for CAMPER.☆17Mar 18, 2024Updated 2 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Nov 9, 2024Updated last year
- Improvement of metagenome-assembled genomes☆58Mar 17, 2020Updated 6 years ago
- ☆14Sep 2, 2021Updated 4 years ago
- Easy-to-use web application for visualization and comparison of genomes in Genbank file☆22May 27, 2022Updated 3 years ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- A Swiss-Army-Knife for Bioinformaticians☆15Updated this week
- ☆13Mar 10, 2019Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- This is a read-only mirror of the CRAN R package repository. car — Companion to Applied Regression. Homepage: https://github.com/bprice…☆10Feb 3, 2026Updated 3 months ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆18Nov 24, 2025Updated 5 months ago
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 3 years ago
- Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram☆13Mar 10, 2026Updated last month
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆17Feb 5, 2022Updated 4 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆106Updated this week
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆38Dec 20, 2024Updated last year
- ☆16Apr 25, 2019Updated 7 years ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆17Dec 29, 2022Updated 3 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Mar 5, 2023Updated 3 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆23May 14, 2023Updated 2 years ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆62Jul 28, 2024Updated last year
- ☆25Jun 20, 2023Updated 2 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated this week
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated 2 months ago
- aweMAGs: a fully automated workflow for eukariotic MAGs☆23Jun 6, 2023Updated 2 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Sep 28, 2025Updated 7 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Pipeline for metagenome and metatranscriptome joint assembly☆20Mar 3, 2023Updated 3 years ago
- ☆22Apr 3, 2023Updated 3 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Sep 8, 2025Updated 7 months ago
- Assessing and Improving the quality of metagenomic assemblies☆31Feb 21, 2022Updated 4 years ago
- ☆34Sep 3, 2025Updated 8 months ago
- Scripts for calculating features and regression of prokaryote OGT☆25Feb 13, 2024Updated 2 years ago
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 4 years ago