tseemann / scapperLinks
Whole genome core alignments from multiple draft genomes
☆13Updated 9 years ago
Alternatives and similar repositories for scapper
Users that are interested in scapper are comparing it to the libraries listed below
Sorting:
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Predict plasmids from uncorrected long read data☆41Updated 5 years ago
- Calculate assocations between genes and traits☆28Updated 7 months ago
- Mapping-Assisted Targeted-Assembly for Metagenomics☆23Updated 7 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- Plasmid exploration of bacterial genomes☆18Updated 3 years ago
- Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …☆13Updated 3 years ago
- ☆37Updated 3 years ago
- ☆16Updated 5 years ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated last month
- Order and orientation of complete bacterial genomes☆28Updated 3 months ago
- plasmidVerify: plasmid contig verification tool☆14Updated 5 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆63Updated 4 months ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆31Updated last month
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- Long read metagenomics practical at EBAME18☆18Updated 7 years ago
- Gene Absence Presence Identification tool.☆27Updated 7 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆51Updated this week
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 6 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆61Updated 8 months ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Recombination-free trees☆60Updated last month
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago