☆22Sep 18, 2026Updated last month
Alternatives and similar repositories for parallel-meta-suite
Users that are interested in parallel-meta-suite are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Jun 2, 2021Updated 5 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Jun 14, 2025Updated last year
- Fungal genome assembly and annotation from Illumina short reads, ONT or PacBio HiFi long reads, a hybrid of short and long reads, or an e…☆15Updated this week
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆20Oct 19, 2023Updated 3 years ago
- ☆17Jan 13, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scripts for antiSMASH/MiBIG data extraction and manipulation☆14May 23, 2024Updated 2 years ago
- ☆20Aug 10, 2022Updated 4 years ago
- Set of useful functions and scripts for analyzing amplicon Miseq data.☆18Sep 27, 2016Updated 10 years ago
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆20Apr 8, 2022Updated 4 years ago
- R package for microbiome biomarker discovery☆199Feb 19, 2025Updated last year
- An R package for automatically aggregating and summarizing lncRNA analysis results.☆16Mar 5, 2019Updated 7 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Nov 29, 2023Updated 2 years ago
- Accurate identification of bacteriophages from metagenomic data using Transformer☆21Nov 6, 2024Updated 2 years ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆188Jul 17, 2026Updated 3 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Variational autoencoder for metagenomic binning☆335Apr 27, 2026Updated 6 months ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆42Sep 20, 2026Updated last month
- This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.☆18Mar 16, 2026Updated 7 months ago
- REference Sequence annotation and CuRatIon Pipeline☆103Updated this week
- ☆19Oct 9, 2017Updated 9 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 3 years ago
- Prediction of microbial interactions in complex communities☆14Aug 14, 2024Updated 2 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School☆67Updated this week
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆56Jan 19, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆53Feb 2, 2021Updated 5 years ago
- Tools for visualising microbial community amplicon data☆74Nov 3, 2025Updated last year
- A companion R package for the MicrobiomeAnalyst web server☆132Updated this week
- Tutorials for data science and bioinformatics☆13May 3, 2024Updated 2 years ago
- TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region☆21Sep 9, 2026Updated last month
- Ensemble binning strategies for combining the output of multiple binning methods.☆24Mar 11, 2023Updated 3 years ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19May 16, 2025Updated last year
- Statistics and visualization for amplicon data☆74May 21, 2026Updated 5 months ago
- Deep Treatment Learning (R)☆17Nov 9, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Integrated Network Analysis Pipeline☆19Dec 19, 2024Updated last year
- METAgenomic LONgitudinal Differential Abundance method☆15Dec 17, 2019Updated 6 years ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- Parser and annotation tools using the FAPROTAX database (Louca S. et al., 2016)☆13Apr 8, 2022Updated 4 years ago
- ☆10Apr 8, 2025Updated last year
- ☆19Nov 7, 2025Updated last year
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆48Updated this week