qdu-bioinfo / parallel-meta-suite
☆20Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for parallel-meta-suite
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 2 months ago
- MAG Circularization Method☆33Updated 2 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 3 weeks ago
- A microbiome analysis toolkit for R☆21Updated last year
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆25Updated 3 months ago
- ☆25Updated 2 months ago
- Working with the outputs of sourmash in R☆25Updated last year
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆31Updated 4 years ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 4 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆39Updated 4 years ago
- Metagenomics-related extended functionalities to samtools☆19Updated last year
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆38Updated last year
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆12Updated last year
- Improvement of metagenome-assembled genomes☆49Updated 4 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆14Updated this week
- ☆15Updated 2 weeks ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆43Updated last year
- Discover and annotate the virome☆31Updated last month
- ☆23Updated 10 months ago
- Tools for extracting individual genomes from metagenomes☆17Updated 11 months ago
- ☆21Updated 4 years ago
- Metagenomics Workshop☆28Updated 7 years ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆29Updated 2 years ago
- TAXnomic Profile Aggregation and STAndardisation☆34Updated 3 weeks ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 5 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated last week
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆11Updated 2 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆47Updated 2 years ago