Integrated Network Analysis Pipeline
☆18Dec 19, 2024Updated last year
Alternatives and similar repositories for iNAP
Users that are interested in iNAP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Microbial ecological network visualization clustering☆144Nov 20, 2025Updated 4 months ago
- ☆15Jan 12, 2026Updated 2 months ago
- Making notes during study 'Numerical Ecology with R second edition'☆24Aug 9, 2019Updated 6 years ago
- The cdom package implements various functions used to model and calculate metrics from absorption spectra of chromophotic dissolved organ…☆12Apr 13, 2020Updated 5 years ago
- This contains all the files and scripts necessary to participate in the FTICR-MS data analysis demonstration at the SBR SFA Community Wor…☆18Jul 8, 2020Updated 5 years ago
- A web app for environmental DNA metabarcoding analysis☆11Dec 30, 2021Updated 4 years ago
- Implementation of CoNet in R☆16Oct 16, 2019Updated 6 years ago
- This repository contains the generalized scripts necessary to perform the ecological analyses detailed within the manuscript titled, "Uni…☆17Nov 2, 2020Updated 5 years ago
- Parser for Ghost Koala☆10Aug 23, 2018Updated 7 years ago
- Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"☆51Dec 9, 2021Updated 4 years ago
- This is a repository for CAMPER.☆17Mar 18, 2024Updated 2 years ago
- ☆17Sep 10, 2024Updated last year
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆34Oct 26, 2020Updated 5 years ago
- SparCC is a Python module for calculating correlations in compositional data☆33May 22, 2024Updated last year
- R and python scripts for correlation-based network analysis☆62May 17, 2020Updated 5 years ago
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆18Mar 17, 2021Updated 5 years ago
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆16May 14, 2023Updated 2 years ago
- staRdom is a package for R to analyse fluorescence and absorbance data of dissolved organic matter (DOM).☆26Feb 19, 2026Updated last month
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 5 years ago
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 4 months ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- ☆11Aug 26, 2022Updated 3 years ago
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆93Oct 1, 2025Updated 5 months ago
- ☆14Jan 27, 2026Updated last month
- Tools for treatment high res mass spectrum of natural organic matter samples☆11Aug 4, 2023Updated 2 years ago
- Easy Amplicon data analysis pipeline☆354Jan 30, 2026Updated last month
- ☆29Jan 16, 2024Updated 2 years ago
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 3 years ago
- GPU-accelerated DNA barcode classification☆13Jan 2, 2025Updated last year
- ☆24Jun 13, 2022Updated 3 years ago
- Repository containing scripts and files for 16S gene community analysis chapter in Methods in Molecular Biology☆25May 22, 2019Updated 6 years ago
- A companion R package for the MicrobiomeAnalyst web server☆131Updated this week
- ☆19Apr 1, 2025Updated 11 months ago
- R shiny app for interactive microbiome analysis☆56Jun 5, 2025Updated 9 months ago
- EasyMultiOmics: An R package for comprehensive multi-omics data mining in systematic microbiome research☆102Dec 17, 2025Updated 3 months ago
- A newly developed metabolic modeling pipeline, SuperCC, which could simulate the performances of different microbiomes.☆26Nov 21, 2025Updated 4 months ago
- Repository for EcoSimR, by Gotelli, N.J. , Hart E. M. and A.M. Ellison. 2014. EcoSimR 0.1.0☆30Apr 23, 2015Updated 10 years ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆230Oct 29, 2025Updated 4 months ago
- Code, unit tests, and tutorials for running PICRUSt2☆384Nov 27, 2025Updated 3 months ago