yedeng-lab / iNAP
Integrated Network Analysis Pipeline
☆15Updated 4 months ago
Alternatives and similar repositories for iNAP:
Users that are interested in iNAP are comparing it to the libraries listed below
- ☆13Updated 3 years ago
- ☆13Updated 5 years ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆29Updated 7 years ago
- Dissimilarity Overlap Curve analysis☆11Updated 2 years ago
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"☆47Updated 3 years ago
- ☆48Updated 4 years ago
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆44Updated 5 months ago
- This is an R package for element cycle analysis using metagenomic data.☆36Updated 4 months ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆31Updated 2 months ago
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆74Updated 2 months ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆30Updated 9 months ago
- Statistics and visualization for amplicon data☆70Updated last year
- dada2 formatted nifH database☆11Updated 11 months ago
- Various functions for analysis of microbial community data☆43Updated 2 years ago
- Normalized Stochasticity Ratio in community assembly☆24Updated 5 months ago
- Utilities for community ecology analysis☆18Updated 4 years ago
- ☆26Updated last year
- ☆14Updated 2 weeks ago
- phyloseq R☆11Updated 5 years ago
- ☆23Updated 6 years ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆11Updated 2 years ago
- ☆12Updated last year
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 2 years ago
- Transform files to the microtable object with microeco package☆26Updated 2 weeks ago
- ☆36Updated last year
- EasyStat☆17Updated 3 years ago
- ☆36Updated 3 weeks ago
- ☆14Updated this week
- Repo for a Microbiome Protocol☆10Updated 6 years ago