yedeng-lab / iNAPLinks
Integrated Network Analysis Pipeline
☆18Updated last year
Alternatives and similar repositories for iNAP
Users that are interested in iNAP are comparing it to the libraries listed below
Sorting:
- This is an R package for element cycle analysis using metagenomic data.☆41Updated 6 months ago
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆91Updated 3 months ago
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆50Updated last year
- ☆53Updated 5 years ago
- Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"☆50Updated 4 years ago
- Microbial ecological network visualization clustering☆141Updated 2 months ago
- ☆14Updated 6 years ago
- EasyMultiOmics: An R package for comprehensive multi-omics data mining in systematic microbiome research☆99Updated last month
- Dissimilarity Overlap Curve analysis☆11Updated 3 years ago
- ☆23Updated 6 years ago
- Statistics and visualization for amplicon data☆72Updated 2 years ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆30Updated 7 years ago
- ☆13Updated 4 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆36Updated this week
- Generating iToL annotations from Spreadsheet or CSV files☆107Updated 5 years ago
- Helper Functions for Interactive Tree Of Life (iTOL)☆180Updated 2 months ago
- R scripts for performing co-occurrence analyses☆36Updated 11 years ago
- dada2 formatted nifH database☆13Updated last year
- FUNGuild: parsing OTUs into functional guilds☆125Updated last year
- ☆13Updated last year
- MetaCompare☆19Updated last year
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆70Updated 10 months ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆33Updated 3 years ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆52Updated 4 years ago
- ☆19Updated 9 months ago
- code repo for mobileOG-db☆43Updated 2 months ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆33Updated last year
- Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes☆18Updated last year
- Microbial co-occurrence network inferred from Earth Microbiome Project☆26Updated 5 years ago