YongxinLiu / Amplicon2022Links
High throughput sequencing -- Amplicon sequencing, mainly include 16S, 18S and ITS for microbiome analysis
☆15Updated 2 years ago
Alternatives and similar repositories for Amplicon2022
Users that are interested in Amplicon2022 are comparing it to the libraries listed below
Sorting:
- ☆16Updated 3 weeks ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago
- Scripts for stat and plot figures in rice microbiome paper☆31Updated 7 months ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆34Updated 3 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 4 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated last month
- ☆27Updated last year
- Transform files to the microtable object with microeco package☆27Updated 2 months ago
- ☆22Updated 5 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆32Updated 6 years ago
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- Scripts and data for Duran & Thiergart et al. Cell, 2018☆24Updated 6 years ago
- ☆25Updated 3 years ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20Updated 8 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆27Updated 2 months ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆30Updated last year
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 5 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated last year
- Repo for a Microbiome Protocol☆10Updated 7 years ago
- Code for running the analysis in our universe of genes project☆8Updated 6 years ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆38Updated 2 years ago
- Professional Comprehensive Omics Data Analysis☆19Updated 6 months ago
- Documentation for Evolview☆28Updated 3 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated last year
- ☆17Updated 6 months ago
- R package for downstream Microbiome analysis☆28Updated 5 months ago
- ☆41Updated 7 years ago
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆14Updated last week
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 4 months ago