LangilleLab / microbiome_helperLinks
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data. 
☆453Updated 10 months ago
Alternatives and similar repositories for microbiome_helper
Users that are interested in microbiome_helper are comparing it to the libraries listed below
Sorting:
- Code, unit tests, and tutorials for running PICRUSt2☆371Updated last week
- A complete pipeline for metagenomic analysis☆435Updated last month
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆445Updated 2 years ago
- bioBakery tools for meta'omic profiling☆288Updated 4 months ago
- Tutorials on phylogenetic and phylogenomic inference☆390Updated 2 years ago
- Accurate sample inference from amplicon data with single nucleotide resolution☆523Updated 3 months ago
- Using R language in microbiome analysis☆343Updated 2 years ago
- 🌈 Interactive analysis of metagenomics data☆427Updated last month
- Easy Amplicon data analysis pipeline☆322Updated last week
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆373Updated this week
- Rapid large-scale prokaryote pan genome analysis☆355Updated 3 years ago
- Rapid haploid variant calling and core genome alignment☆547Updated last year
- hybrid assembly pipeline for bacterial genomes☆623Updated last year
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆392Updated 4 months ago
- Source for the QIIME 2 Framework (Q2F).☆516Updated this week
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆392Updated last month
- TransDecoder source☆298Updated last month
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆224Updated 2 weeks ago
- Mass screening of contigs for antimicrobial and virulence genes☆444Updated last year
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆242Updated 4 years ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆355Updated 2 months ago
- QIIME 2中文文档(QIIME 2 Chinese Manual)☆294Updated 2 years ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆527Updated last month
- Phylogenetic orthology inference for comparative genomics☆803Updated 3 months ago
- Genome assembly evaluation tool☆468Updated 11 months ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆535Updated last month
- Interactively explore metagenomes and more from a web browser.☆490Updated 3 years ago
- Fast genome-wide functional annotation through orthology assignment☆664Updated 4 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆561Updated last week
- ATLAS - Three commands to start analyzing your metagenome data☆400Updated last month