☆40Sep 29, 2022Updated 3 years ago
Alternatives and similar repositories for eCLIP
Users that are interested in eCLIP are comparing it to the libraries listed below
Sorting:
- A tool to identify CLIP-seq peaks☆71Oct 31, 2025Updated 4 months ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Aug 10, 2021Updated 4 years ago
- General Use Scripts and Helper functions☆16Mar 29, 2018Updated 7 years ago
- Skip the peaks and expose RNA-binding in CLIP data☆10Mar 12, 2026Updated last week
- Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks☆10Feb 16, 2022Updated 4 years ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆22Jul 22, 2025Updated 7 months ago
- splicing and feature maps for RBPs☆25Mar 11, 2026Updated last week
- iCount, protein-RNA interaction analytics☆23Dec 14, 2021Updated 4 years ago
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆23Jan 15, 2026Updated 2 months ago
- ☆11Sep 17, 2020Updated 5 years ago
- ☆13Feb 20, 2026Updated last month
- CLIP-seq Analysis of Multi-mapped reads☆31Jul 20, 2021Updated 4 years ago
- Perl scripts for analysis RIC-seq data☆11Feb 6, 2020Updated 6 years ago
- 🧪 Optimized protocol for m6A-SAC-seq☆12Jun 16, 2025Updated 9 months ago
- ☆24Jul 29, 2025Updated 7 months ago
- ERVmap is one part curated database of human proviral ERV loci and one part a stringent algorithm to determine which ERVs are transcribed…☆26Sep 28, 2021Updated 4 years ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆16Sep 10, 2024Updated last year
- A Perl/R pipeline for plotting metagenes☆37Sep 17, 2021Updated 4 years ago
- A tool to facilitate comparative visualisation of CLIP data☆16Nov 29, 2023Updated 2 years ago
- Analyze 3'UTR usage in single-cell data.☆15Sep 25, 2021Updated 4 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆120Jan 15, 2023Updated 3 years ago
- Package to extend Airflow functionality with CWL v1.0 support☆12Jun 12, 2019Updated 6 years ago
- Ultra-fast 5' and 3' demultiplexer☆29Apr 23, 2024Updated last year
- Genome databases generation pipeline for ngs.plot and region_analysis.☆17Sep 8, 2015Updated 10 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆293Nov 6, 2025Updated 4 months ago
- CLIP Tool Kit (CTK)☆21Apr 28, 2024Updated last year
- A collection of perl scripts for NGS analysis☆17Oct 2, 2024Updated last year
- Human and mouse genome assemblies customized for rDNA mapping☆12Mar 7, 2025Updated last year
- ☆17Jul 19, 2024Updated last year
- ☆12Feb 19, 2021Updated 5 years ago
- collBook: Refine biological field observations☆12Dec 8, 2022Updated 3 years ago
- A tutorial for the free Inkscape cross-platform vector graphics editor.☆13Oct 4, 2016Updated 9 years ago
- piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School☆63Jun 22, 2025Updated 8 months ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆21Apr 28, 2020Updated 5 years ago
- A suite for the analysis of CLIP-Seq datasets.☆12Jan 31, 2022Updated 4 years ago
- A pipeline for scRNA analysis under HPC☆11Jul 15, 2024Updated last year
- Fully Automated and Standardized (FAST) iCLIP analysis pipeline.☆22Oct 7, 2017Updated 8 years ago
- Plot stacked logos for single or multiple DNA, RNA and amino acid sequence☆18Nov 5, 2025Updated 4 months ago
- ☆13May 13, 2024Updated last year