CellProfiling / SingleCellProteogenomicsLinks
Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model
☆13Updated last year
Alternatives and similar repositories for SingleCellProteogenomics
Users that are interested in SingleCellProteogenomics are comparing it to the libraries listed below
Sorting:
- TRUST4 manuscript evaluation☆15Updated 3 years ago
- Detecting cancer subtypes with machine learning.☆10Updated 5 years ago
- ☆12Updated 4 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 6 years ago
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆23Updated 3 years ago
- Paired-seq☆14Updated last year
- Accompanying analysis code for the FRASER manuscript☆26Updated 5 years ago
- Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆16Updated 5 years ago
- ☆12Updated 4 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 8 months ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- Example scripts for analyzing CUT&RUN datasets☆13Updated 7 years ago
- Mean Alterations Using Discrete Expression☆14Updated last year
- Explore the cancer relevance of your gene list☆52Updated 3 weeks ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- Code related to scRNA analysis using the scAmpi workflow☆27Updated 3 months ago
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Updated 2 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 2 weeks ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆20Updated last month
- Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)☆16Updated 2 years ago
- Improved Ribo-seq enables identification of cryptic translation events☆16Updated 7 years ago
- scover☆23Updated last year
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- A collection of perl scripts for NGS analysis☆16Updated last year
- ☆16Updated last year
- ☆20Updated 2 years ago