CellProfiling / SingleCellProteogenomicsLinks
Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model
☆13Updated 2 years ago
Alternatives and similar repositories for SingleCellProteogenomics
Users that are interested in SingleCellProteogenomics are comparing it to the libraries listed below
Sorting:
- TRUST4 manuscript evaluation☆16Updated 3 years ago
- A collection of perl scripts for NGS analysis☆17Updated last year
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 6 years ago
- Detecting cancer subtypes with machine learning.☆10Updated 5 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 4 months ago
- ☆12Updated 4 years ago
- Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆16Updated 6 years ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆24Updated 3 years ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Updated 2 years ago
- ☆20Updated 2 years ago
- ☆12Updated 5 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆20Updated 3 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Updated 4 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- Paired-seq☆15Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)☆16Updated 2 years ago
- Interactive software tool for the assignment of cell types in single-cell studies.☆34Updated 2 years ago
- Code related to scRNA analysis using the scAmpi workflow☆27Updated last week
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Updated 2 years ago
- TF analysis from epigenetic and Hi-C data☆19Updated 9 months ago
- Pipeline for processing of GoT-ChA genotyping data and downstream analysis☆15Updated 10 months ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Updated 2 years ago
- Accompanying analysis code for the FRASER manuscript☆26Updated 5 years ago
- epigenome analysis to rank transcription factors☆15Updated 6 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- ☆25Updated 3 years ago
- SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions☆11Updated last year