serenolopezdarwin / apanalysisLinks
Analyze 3'UTR usage in single-cell data.
☆15Updated 4 years ago
Alternatives and similar repositories for apanalysis
Users that are interested in apanalysis are comparing it to the libraries listed below
Sorting:
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆17Updated 4 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆23Updated 3 years ago
- ☆51Updated last year
- ☆39Updated 2 months ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆31Updated last week
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 2 years ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆17Updated 2 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 7 months ago
- code for data processing and visualisation associated with the stromal subclasses manuscript☆13Updated 5 years ago
- ☆32Updated 4 years ago
- ☆24Updated 3 weeks ago
- single-cell clustering based on alternative splicing landscapes☆23Updated last year
- Code repository for single cell RNA-seq☆39Updated 5 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆20Updated 2 weeks ago
- ☆18Updated last year
- R package of CSOmap(developing☆13Updated 3 years ago
- ☆29Updated 4 years ago
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Updated 2 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- ☆34Updated 6 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆56Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆23Updated last year
- An open source and flexible pipeline to analyze DNBelab C Series single-cell RNA datasets.☆35Updated 2 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Repository for Cibersortx☆60Updated 4 years ago
- ☆32Updated 9 months ago
- AD regulome analysis☆14Updated 2 years ago
- scWGCNA☆61Updated 3 years ago
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 3 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 5 years ago