YeoLab / clipperLinks
A tool to identify CLIP-seq peaks
☆70Updated 3 months ago
Alternatives and similar repositories for clipper
Users that are interested in clipper are comparing it to the libraries listed below
Sorting:
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Updated 4 years ago
- Tools for working with BUS files☆102Updated 8 months ago
- A tool for bigWig files.☆118Updated 7 years ago
- ☆94Updated 7 months ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆124Updated 4 months ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆111Updated 4 years ago
- nucleosome calling using ATAC-seq☆110Updated 5 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 6 months ago
- Publication quality NGS track plotting☆117Updated 3 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆123Updated 2 months ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆116Updated 3 weeks ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆92Updated 3 years ago
- DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)☆52Updated 3 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- ☆120Updated 2 years ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆108Updated 2 months ago
- HMMRATAC peak caller for ATAC-seq data☆98Updated last year
- MOODS: Motif Occurrence Detection Suite☆113Updated 2 years ago
- A modular Hi-C mapping pipeline☆101Updated last year
- ☆104Updated 2 weeks ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆111Updated 3 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆87Updated last year
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Updated 10 months ago
- HiC uniform processing pipeline☆62Updated 2 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆124Updated this week
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- Command-line tool for the visualization of splicing events across multiple samples☆136Updated last year
- A (mostly) universal methylation extractor for BS-seq experiments.☆176Updated last year
- Pangolin is a deep-learning method for predicting splice site strengths.☆85Updated last year
- Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files☆116Updated 4 years ago