YeoLab / clipper
A tool to identify CLIP-seq peaks
☆66Updated last year
Alternatives and similar repositories for clipper:
Users that are interested in clipper are comparing it to the libraries listed below
- Single cell Nanopore sequencing data for Genotype and Phenotype☆44Updated last week
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆33Updated last month
- Full-length transcriptome splicing and mutation analysis☆76Updated 6 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆62Updated 2 months ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆65Updated 4 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆46Updated last year
- ☆116Updated last year
- Streamlining SLAM-seq analysis with ultra-high sensitivity☆41Updated 8 months ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆168Updated 7 months ago
- mgatk: mitochondrial genome analysis toolkit☆104Updated 10 months ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆28Updated 3 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆114Updated last year
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆49Updated 5 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆56Updated last month
- HemTools: a collection of NGS pipelines and bioinformatic analyses☆69Updated this week
- Analysis of Chromosome Conformation Capture data (Hi-C)☆95Updated last month
- Software for Quantifying Interspersed Repeat Expression☆53Updated 2 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆74Updated 6 months ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆100Updated 2 weeks ago
- ☆79Updated 2 weeks ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆56Updated last week
- ☆53Updated 3 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆80Updated 2 years ago
- Lightweight converter between hic and cool contact matrices.☆67Updated 6 months ago
- Pangolin is a deep-learning method for predicting splice site strengths.☆66Updated 7 months ago
- Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency☆146Updated 2 months ago
- Analysis pipelines for genomic sequencing data☆65Updated 3 months ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆106Updated 2 months ago
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆69Updated this week
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆146Updated 4 months ago