FredHutch / SEACRLinks
SEACR: Sparse Enrichment Analysis for CUT&RUN
☆109Updated 2 years ago
Alternatives and similar repositories for SEACR
Users that are interested in SEACR are comparing it to the libraries listed below
Sorting:
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆96Updated 2 weeks ago
- Generate IGV style locus tracks from bigWig files in R☆166Updated 9 months ago
- Detecting sites of genomic enrichment☆192Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 8 months ago
- Check strandedness of RNA-Seq fastq files☆125Updated 2 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- Basic workflow for ATAC-seq analysis☆82Updated last year
- ASCAT R package☆186Updated 4 months ago
- mgatk: mitochondrial genome analysis toolkit☆108Updated 6 months ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆144Updated 2 years ago
- ☆117Updated last year
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆163Updated 2 months ago
- ☆137Updated 6 years ago
- A short tutorial on how to use RSEM☆137Updated 5 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- ☆94Updated this week
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆116Updated 6 months ago
- FAN-C: Framework for the ANalysis of C-like data☆116Updated last year
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆149Updated last year
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆139Updated 11 months ago
- release version☆54Updated 3 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆109Updated 5 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆207Updated 3 weeks ago
- ☆62Updated last year
- Analysis pipeline for ATAC-seq data☆67Updated last year
- Estimate locus specific human LINE-1 expression.☆36Updated 2 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆95Updated 4 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆217Updated last month
- ATAC-seq snakemake pipeline☆89Updated 5 years ago