FredHutch / SEACRLinks
SEACR: Sparse Enrichment Analysis for CUT&RUN
☆120Updated 3 years ago
Alternatives and similar repositories for SEACR
Users that are interested in SEACR are comparing it to the libraries listed below
Sorting:
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆107Updated last week
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- Detecting sites of genomic enrichment☆198Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆98Updated last year
- Generate IGV style locus tracks from bigWig files in R☆175Updated last year
- ☆145Updated 7 years ago
- ☆120Updated 2 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆131Updated last month
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆147Updated 2 years ago
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆105Updated 3 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆122Updated 2 months ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- ASCAT R package☆195Updated 4 months ago
- ☆94Updated 6 months ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Updated 4 years ago
- FAN-C: Framework for the ANalysis of C-like data☆121Updated last year
- Publication quality NGS track plotting☆117Updated 3 months ago
- ☆104Updated last week
- Basic workflow for ATAC-seq analysis☆91Updated last year
- ☆157Updated 8 months ago
- ENCODE Uniform processing pipeline for ChIP-seq☆124Updated 5 years ago
- mgatk: mitochondrial genome analysis toolkit☆110Updated last year
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆157Updated last year
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- ☆65Updated last year
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆153Updated last year
- release version☆57Updated 3 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆222Updated 2 months ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆276Updated 2 months ago