FredHutch / SEACRLinks
SEACR: Sparse Enrichment Analysis for CUT&RUN
☆112Updated 2 years ago
Alternatives and similar repositories for SEACR
Users that are interested in SEACR are comparing it to the libraries listed below
Sorting:
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆100Updated 2 weeks ago
- Detecting sites of genomic enrichment☆194Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 10 months ago
- Generate IGV style locus tracks from bigWig files in R☆171Updated 11 months ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆146Updated 2 years ago
- Basic workflow for ATAC-seq analysis☆86Updated last year
- Check strandedness of RNA-Seq fastq files☆125Updated 3 years ago
- ☆139Updated 6 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆117Updated 8 months ago
- A short tutorial on how to use RSEM☆138Updated 5 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- ASCAT R package☆189Updated 2 weeks ago
- ☆119Updated 2 years ago
- ☆63Updated last year
- STAR based ENCODE Long RNA-Seq processing pipeline☆95Updated 4 years ago
- ☆153Updated 4 months ago
- mgatk: mitochondrial genome analysis toolkit☆108Updated 8 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- release version☆54Updated 3 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆142Updated last year
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆153Updated last year
- ☆88Updated 2 months ago
- ☆155Updated 2 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆168Updated 4 months ago
- Publication quality NGS track plotting☆114Updated 3 years ago
- FAN-C: Framework for the ANalysis of C-like data☆119Updated last year
- SNV calling from single cell sequencing☆109Updated 10 months ago
- Microsatellite instability (MSI) detection for tumor only data.☆110Updated last year
- Links to ATAC-seq analysis tools☆70Updated 4 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆210Updated 2 months ago