SEACR: Sparse Enrichment Analysis for CUT&RUN
☆123Jan 15, 2023Updated 3 years ago
Alternatives and similar repositories for SEACR
Users that are interested in SEACR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tutorial Website☆68Feb 1, 2021Updated 5 years ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆116Oct 26, 2026Updated last week
- ☆34Jul 20, 2018Updated 8 years ago
- Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.☆20May 26, 2025Updated last year
- MACS -- Model-based Analysis of ChIP-Seq☆789Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- CUT&RUN and CUT&Tag data processing and analysis☆118Mar 4, 2025Updated last year
- Detecting sites of genomic enrichment☆205Sep 20, 2026Updated last month
- chromatin Variability Across Regions (of the genome!)☆198May 1, 2026Updated 6 months ago
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆272Aug 24, 2026Updated 2 months ago
- IDR☆179Sep 18, 2018Updated 8 years ago
- Peak caller for CUT&TAG data☆31Aug 18, 2022Updated 4 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆259Aug 3, 2026Updated 3 months ago
- Intro to ChIPseq using HPC☆323Jan 30, 2023Updated 3 years ago
- ChIP-seq analysis notes from Ming Tang☆854Aug 5, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tools to process and analyze deep sequencing data.☆772Updated this week
- Application for making ENCODE Blacklists☆350Apr 23, 2021Updated 5 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆22Sep 17, 2026Updated last month
- ENCODE ChIP-seq pipeline☆283Feb 15, 2024Updated 2 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆12Jan 18, 2021Updated 5 years ago
- ☆102Jun 16, 2026Updated 4 months ago
- Example scripts for analyzing CUT&RUN datasets☆13Oct 3, 2018Updated 8 years ago
- ENCODE ATAC-seq pipeline☆459Jul 18, 2024Updated 2 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆322Apr 27, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Docker for 4DN Hi-C processing pipeline☆63Nov 26, 2024Updated last year
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Jul 6, 2021Updated 5 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆44Aug 27, 2026Updated 2 months ago
- Locus Overlap Analysis: Enrichment of Genomic Ranges☆82Sep 1, 2020Updated 6 years ago
- Paired Genomic Loci Tool Suite☆35Nov 23, 2022Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Feb 14, 2022Updated 4 years ago
- ☆18May 12, 2023Updated 3 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆907Oct 3, 2026Updated last month
- Lightweight converter between hic and cool contact matrices.☆74Jul 15, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- GENome Organisation Visual Analytics☆91Feb 3, 2026Updated 9 months ago
- Analyze 3'UTR usage in single-cell data.☆15Sep 25, 2021Updated 5 years ago
- ☆21Jan 20, 2021Updated 5 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆150Apr 5, 2024Updated 2 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆270May 5, 2023Updated 3 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Jul 20, 2020Updated 6 years ago
- Simplify functional enrichment results☆128Jan 30, 2026Updated 9 months ago