FredHutch / SEACR
SEACR: Sparse Enrichment Analysis for CUT&RUN
☆106Updated 2 years ago
Alternatives and similar repositories for SEACR:
Users that are interested in SEACR are comparing it to the libraries listed below
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆87Updated 3 weeks ago
- Detecting sites of genomic enrichment☆190Updated last year
- Generate IGV style locus tracks from bigWig files in R☆153Updated 2 months ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆237Updated 2 months ago
- ☆116Updated last year
- ASCAT R package☆173Updated last month
- ENCODE Uniform processing pipeline for ChIP-seq☆121Updated 4 years ago
- Check strandedness of RNA-Seq fastq files☆118Updated 2 years ago
- chromatin Variability Across Regions (of the genome!)☆162Updated 6 months ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- Publication quality NGS track plotting☆109Updated 2 years ago
- ☆125Updated 6 years ago
- A short tutorial on how to use RSEM☆136Updated 4 years ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆138Updated last year
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆205Updated last month
- Fast alignment and preprocessing of chromatin profiles☆195Updated last month
- STAR based ENCODE Long RNA-Seq processing pipeline☆93Updated 3 years ago
- ☆103Updated 8 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- ATAC-seq peak-calling and QC analysis pipeline☆195Updated last week
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆106Updated 4 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆139Updated this week
- mgatk: mitochondrial genome analysis toolkit☆104Updated 10 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆200Updated this week
- ☆57Updated 8 months ago
- ☆146Updated 2 years ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆209Updated 7 months ago
- Basic workflow for ATAC-seq analysis☆72Updated 10 months ago
- ☆79Updated 2 weeks ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆122Updated 4 months ago