nf-core / clipseq
CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.
☆21Updated this week
Alternatives and similar repositories for clipseq:
Users that are interested in clipseq are comparing it to the libraries listed below
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆25Updated last week
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆52Updated 2 months ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆49Updated this week
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆57Updated 3 months ago
- Long read to rMATS☆31Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆38Updated 3 months ago
- ☆21Updated 3 months ago
- ☆15Updated 2 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 8 months ago
- ENCODE whole-genome bisulfite sequencing (WGBS) pipeline☆31Updated 3 years ago
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆28Updated 2 months ago
- Version II of Mandalorion☆32Updated 6 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated last week
- for visual evaluation of read support for structural variation☆52Updated 9 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆59Updated 5 months ago
- Genomic Association Tester☆30Updated last year
- Python library for processing and visualizing Hi-C data☆20Updated 4 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- Comprehensive and scalable differential splicing analyses☆15Updated 2 weeks ago
- optimization of ribosome P-site positioning in ribosome profiling data☆50Updated last month
- A Python library to visualize and analyze long-read transcriptomes☆59Updated last year
- Long-read Isoform Quantification and Analysis☆39Updated this week
- Repository for the Anczukow-Lab splicing pipeline☆14Updated 2 weeks ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- TEspeX - pipeline for Transposable Elements expression quantification☆20Updated last year
- ☆26Updated 11 months ago
- SingleCell Nanopore sequencing data analysis☆56Updated 3 months ago
- FRASER - Find RAre Splicing Events in RNA-seq☆43Updated 3 weeks ago