CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.
☆24Jan 15, 2026Updated 5 months ago
Alternatives and similar repositories for clipseq
Users that are interested in clipseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MNase-seq analysis pipeline using BWA and DANPOS2.☆13Feb 23, 2026Updated 4 months ago
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Jun 22, 2026Updated last week
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆68Updated this week
- A tool to identify CLIP-seq peaks☆72Oct 31, 2025Updated 8 months ago
- Piranha is a peak-caller for CLIP- and RIP-seq data☆20Feb 7, 2018Updated 8 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- CLIP Tool Kit (CTK)☆22Apr 28, 2024Updated 2 years ago
- Model-based analysis of APA using 3' end-linked reads☆12Aug 14, 2021Updated 4 years ago
- SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.☆11Sep 15, 2023Updated 2 years ago
- Lightweight Alignment Based Resolution of Alternative Three Prime Ends☆10Jan 26, 2024Updated 2 years ago
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jun 3, 2025Updated last year
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆18Sep 10, 2024Updated last year
- iCount, protein-RNA interaction analytics☆23Dec 14, 2021Updated 4 years ago
- polyApipe☆22Feb 10, 2025Updated last year
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Aug 10, 2021Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆42Sep 29, 2022Updated 3 years ago
- UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies☆28Apr 30, 2026Updated 2 months ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Apr 4, 2025Updated last year
- A tool to facilitate comparative visualisation of CLIP data☆18Nov 29, 2023Updated 2 years ago
- k-mer similarity analysis pipeline☆23Apr 30, 2026Updated 2 months ago
- cDNA read preprocessing☆94Jul 25, 2024Updated last year
- Website Deployment for CRC User Manual☆13May 27, 2026Updated last month
- An analysis pipeline for Nanostring nCounter expression data.☆18Apr 30, 2026Updated 2 months ago
- ☆22Feb 20, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- AIDE: annotation-assisted isoform discovery and quantification from RNA-seq data☆16Aug 6, 2022Updated 3 years ago
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆24Sep 7, 2023Updated 2 years ago
- Nascent Transcription Processing Pipeline☆23Updated this week
- RNA-Seq pipeline☆36Jul 22, 2015Updated 10 years ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆33Updated this week
- Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.☆18Jun 3, 2025Updated last year
- omniCLIP is a CLIP-Seq peak caller☆16Nov 14, 2020Updated 5 years ago
- Cooler demo using a Jupyter notebook Binder☆19Sep 24, 2020Updated 5 years ago
- deploy a snakemake pipeline directly from version control (under development)☆26Jun 18, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆22Jul 22, 2025Updated 11 months ago
- Call and score variants from WGS/WES of rare disease patients.☆119Updated this week
- ☆20Sep 28, 2019Updated 6 years ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆28Jun 23, 2026Updated last week
- ☆10May 11, 2022Updated 4 years ago
- A pipeline to investigate horizontal gene transfer from NGS data☆27Apr 30, 2026Updated 2 months ago
- A simple fastp-MultiQC nextflow pipeline☆12Feb 2, 2023Updated 3 years ago