CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.
☆23Jan 15, 2026Updated 2 months ago
Alternatives and similar repositories for clipseq
Users that are interested in clipseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MNase-seq analysis pipeline using BWA and DANPOS2.☆13Feb 23, 2026Updated last month
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Mar 31, 2026Updated last week
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆63Jun 3, 2025Updated 10 months ago
- A tool to identify CLIP-seq peaks☆72Oct 31, 2025Updated 5 months ago
- Piranha is a peak-caller for CLIP- and RIP-seq data☆20Feb 7, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- CLIP Tool Kit (CTK)☆21Apr 28, 2024Updated last year
- Model-based analysis of APA using 3' end-linked reads☆12Aug 14, 2021Updated 4 years ago
- SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.☆12Sep 15, 2023Updated 2 years ago
- Lightweight Alignment Based Resolution of Alternative Three Prime Ends☆10Jan 26, 2024Updated 2 years ago
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jun 3, 2025Updated 10 months ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆16Sep 10, 2024Updated last year
- iCount, protein-RNA interaction analytics☆23Dec 14, 2021Updated 4 years ago
- polyApipe☆19Feb 10, 2025Updated last year
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Aug 10, 2021Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆11May 9, 2024Updated last year
- ☆41Sep 29, 2022Updated 3 years ago
- UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies☆26Mar 16, 2026Updated 3 weeks ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Apr 4, 2025Updated last year
- A tool to facilitate comparative visualisation of CLIP data☆16Nov 29, 2023Updated 2 years ago
- k-mer similarity analysis pipeline☆22Nov 20, 2025Updated 4 months ago
- cDNA read preprocessing☆87Jul 25, 2024Updated last year
- Website Deployment for CRC User Manual☆13Updated this week
- AIDE: annotation-assisted isoform discovery and quantification from RNA-seq data☆14Aug 6, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- An analysis pipeline for Nanostring nCounter expression data.☆18Jan 30, 2026Updated 2 months ago
- ☆21Feb 20, 2022Updated 4 years ago
- Nascent Transcription Processing Pipeline☆22Nov 20, 2025Updated 4 months ago
- RNA-Seq pipeline☆36Jul 22, 2015Updated 10 years ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆33Nov 20, 2025Updated 4 months ago
- Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.☆18Jun 3, 2025Updated 10 months ago
- omniCLIP is a CLIP-Seq peak caller☆16Nov 14, 2020Updated 5 years ago
- deploy a snakemake pipeline directly from version control (under development)☆25Mar 12, 2026Updated 3 weeks ago
- Cooler demo using a Jupyter notebook Binder☆18Sep 24, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆22Jul 22, 2025Updated 8 months ago
- Call and score variants from WGS/WES of rare disease patients.☆115Mar 31, 2026Updated last week
- ☆20Sep 28, 2019Updated 6 years ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆27Apr 2, 2026Updated last week
- ☆10May 11, 2022Updated 3 years ago
- A pipeline to investigate horizontal gene transfer from NGS data☆26Nov 20, 2025Updated 4 months ago
- A simple fastp-MultiQC nextflow pipeline☆12Feb 2, 2023Updated 3 years ago