Alternatives and similar repositories for clipseq:

Users that are interested in clipseq are comparing it to the libraries listed below

• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆34Updated this week
• jsh58 / DMRfinder
  Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
  ☆27Updated last year
• nf-core / rnasplice
  rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
  ☆54Updated 2 months ago
• YeoLab / outrigger
  Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data
  ☆65Updated 5 years ago
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆61Updated last year
• hms-dbmi / chromoscope
  Interactive multiscale visualization for structural variation in human genomes
  ☆68Updated this week
• gagneurlab / FRASER
  FRASER - Find RAre Splicing Events in RNA-seq
  ☆44Updated last month
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆35Updated 9 months ago
• TRON-Bioinformatics / EasyFuse
  EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.
  ☆57Updated 4 months ago
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆35Updated last week
• Xinglab / CLAM
  CLIP-seq Analysis of Multi-mapped reads
  ☆30Updated 3 years ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆39Updated 3 years ago
• gaolabtools / scNanoGPS
  Single cell Nanopore sequencing data for Genotype and Phenotype
  ☆50Updated last week
• rvolden / Mandalorion-Episode-II
  Version II of Mandalorion
  ☆32Updated 6 years ago
• XiaoTaoWang / TADLib
  A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
  ☆41Updated 2 years ago
• mritchielab / FLAMES
  A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.
  ☆34Updated this week
• LosicLab / starchip
  Detection of Circular RNA and Fusions from RNA-Seq
  ☆32Updated 6 years ago
• GoekeLab / proActiv
  Estimation of Promoter Activity from RNA-Seq data
  ☆51Updated 3 years ago
• gagneurlab / absplice
  ☆38Updated 7 months ago
• gxiaolab / mountainClimber
  ☆20Updated 5 years ago
• KCCG / mity
  mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data
  ☆36Updated last week
• broadinstitute / longbow
  Annotation and segmentation of MAS-seq data
  ☆20Updated last year
• BioinfoUNIBA / REDItools2
  ☆56Updated 3 years ago
• fansalon / TEspeX
  TEspeX - pipeline for Transposable Elements expression quantification
  ☆20Updated last year
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆50Updated last month
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆25Updated 11 months ago
• djhn75 / RNAEditor
  ☆15Updated 2 years ago
• shimlab / BLAZE
  SingleCell Nanopore sequencing data analysis
  ☆57Updated 4 months ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆36Updated 3 weeks ago
• zhpn1024 / ribotish
  Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data
  ☆38Updated 4 months ago