YeoLab / skipperLinks
Skip the peaks and expose RNA-binding in CLIP data
☆10Updated last week
Alternatives and similar repositories for skipper
Users that are interested in skipper are comparing it to the libraries listed below
Sorting:
- R package to access DoRothEA's regulons☆154Updated last year
- Python implementation of the Slingshot pseudotime algorithm☆66Updated last month
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆122Updated this week
- Clonotype Neighbor Graph Analysis☆92Updated 3 months ago
- Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)☆19Updated 4 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- ☆38Updated 3 years ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆32Updated 4 years ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆96Updated 5 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 4 months ago
- A docker image for single-cell analysis☆101Updated last month
- software to detect doublets☆95Updated 11 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆123Updated last week
- ☆58Updated 6 months ago
- Tools used in Human Cell Landscape(HCL)☆56Updated 5 years ago
- ☆48Updated last week
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆94Updated last year
- Tools for single-cell data processing☆128Updated last year
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆98Updated 2 months ago
- Normalization of RNA-seq gene expression☆101Updated 4 months ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated 3 months ago
- Using TCR and expression for sequence embedding☆60Updated 3 months ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆149Updated last year
- ☆67Updated 2 years ago
- This repository hosts a minimal version of a Python API for BPNet.☆53Updated last month
- Efficient genotyping bi-allelic SNPs on single cells☆155Updated last month
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆60Updated 3 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆80Updated 10 months ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆86Updated 4 years ago
- SCSA: cell type annotation for single-cell RNA-seq data☆92Updated 2 years ago