YeoLab / skipperLinks
Skip the peaks and expose RNA-binding in CLIP data
☆10Updated last week
Alternatives and similar repositories for skipper
Users that are interested in skipper are comparing it to the libraries listed below
Sorting:
- Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)☆19Updated 4 years ago
- R package to access DoRothEA's regulons☆154Updated last year
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆119Updated 3 years ago
- ☆40Updated 3 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆123Updated this week
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆91Updated 3 months ago
- ☆49Updated last week
- Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing da…☆52Updated 11 months ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 10 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 6 months ago
- Toolkit for single-cell DNA methylation analysis.☆46Updated 2 weeks ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆96Updated 5 years ago
- code to run sei and obtain sei and sequence class predictions☆111Updated 3 years ago
- ☆69Updated 2 years ago
- ☆69Updated 2 months ago
- Using TCR and expression for sequence embedding☆62Updated last month
- Clonotype Neighbor Graph Analysis☆95Updated 5 months ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Updated 4 years ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆57Updated last week
- ☆63Updated 5 years ago
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆100Updated 4 months ago
- Tools used in Human Cell Landscape(HCL)☆56Updated 5 years ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆82Updated last year
- Tools for single-cell data processing☆132Updated last year
- Notes on ChIP-seq and other-seq-related tools☆26Updated 3 weeks ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆53Updated last year
- Python implementation of the Slingshot pseudotime algorithm☆69Updated 3 months ago
- Notes on single-cell Hi-C technologies, tools, and data☆86Updated last year
- ☆57Updated 2 weeks ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆30Updated 2 months ago