Skip the peaks and expose RNA-binding in CLIP data
โ10Jan 27, 2026Updated last month
Alternatives and similar repositories for skipper
Users that are interested in skipper are comparing it to the libraries listed below
Sorting:
- โ40Sep 29, 2022Updated 3 years ago
- ๐งช Optimized protocol for m6A-SAC-seqโ11Jun 16, 2025Updated 8 months ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seqโ22Jul 22, 2025Updated 7 months ago
- Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)โ20Oct 7, 2021Updated 4 years ago
- The project for analyzing differential methylation of MeRIP-seq dataโ24Sep 5, 2023Updated 2 years ago
- โ12Feb 6, 2026Updated 3 weeks ago
- CLIP-seq Analysis of Multi-mapped readsโ31Jul 20, 2021Updated 4 years ago
- Pipeline to calculate icSHAPE score in genome with sliding window strategyโ12Aug 23, 2022Updated 3 years ago
- Analysis pipeline for RNA structural probing mutational profiling data sequenced on Nanopore devicesโ10Feb 10, 2024Updated 2 years ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq dataโ32Aug 10, 2021Updated 4 years ago
- An R package for writing Geneva Graduate Institute documentsโ11Sep 3, 2024Updated last year
- โ15May 22, 2025Updated 9 months ago
- Collate data from Globus Search for easy discovery and transferโ14Dec 1, 2025Updated 2 months ago
- โ12Jan 31, 2023Updated 3 years ago
- A mapper for 10x-flex single cell sequencing reads with fixed abstract geometriesโ37Feb 12, 2026Updated 2 weeks ago
- New computational framework to process and analyze KAS-seq and spKAS-seq data.โ15Dec 5, 2023Updated 2 years ago
- Systematic analyses of intronic polyadenylation from standard RNAseq dataโ16Sep 10, 2024Updated last year
- โ10Feb 3, 2026Updated 3 weeks ago
- CellAnnโ12Nov 3, 2023Updated 2 years ago
- โ15Jun 11, 2018Updated 7 years ago
- โ15Feb 3, 2026Updated 3 weeks ago
- A pipeline to process m6A-seq data and down stream analysis.โ44Aug 5, 2020Updated 5 years ago
- Analysis of co-fractionation MS datasetsโ13Dec 7, 2021Updated 4 years ago
- โ10Jun 5, 2021Updated 4 years ago
- An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptomeโ10Jan 25, 2019Updated 7 years ago
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.โ10Oct 29, 2021Updated 4 years ago
- Analyze 3'UTR usage in single-cell data.โ15Sep 25, 2021Updated 4 years ago
- Large-scale sparse matrix factorization for Rustโ11Jan 15, 2026Updated last month
- C++ lossless and lossy mass spectrometry compressionโ13Sep 16, 2021Updated 4 years ago
- โ11Oct 31, 2022Updated 3 years ago
- LoopPredictor: Predicting unknown enhancer-mediated genome topology by an ensemble machine learning modelโ14Jun 18, 2021Updated 4 years ago
- โ13Jan 29, 2021Updated 5 years ago
- โ12Feb 12, 2024Updated 2 years ago
- Kdrew's scripts for handling protein complex map dataโ14Jun 12, 2025Updated 8 months ago
- R package for interacting with the Crunch APIโ10Updated this week
- Multiplexed data-independent acquisition (plexDIA) for increasing proteomics throughput. The code is distributed by an MIT license.โ12Mar 17, 2025Updated 11 months ago
- GROMACS implementation of TraPPE-UA force field with HH-Alkane modificationsโ13Sep 24, 2022Updated 3 years ago
- Variant impact phenotyping using Perturb-seqโ10Apr 22, 2024Updated last year
- โ13Feb 20, 2026Updated last week