A tool to facilitate comparative visualisation of CLIP data
☆16Nov 29, 2023Updated 2 years ago
Alternatives and similar repositories for clipplotr
Users that are interested in clipplotr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Phenotype detection in pooled genetic perturbation screens☆12Mar 13, 2024Updated 2 years ago
- ☆11Feb 10, 2025Updated last year
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆18Oct 12, 2025Updated 6 months ago
- Pan-transcriptomic phenotyping☆19Mar 8, 2026Updated last month
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Aug 10, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- small RNA analysis programs: standalone jar files (sRNAbench, sRNAde, etc), manuals and Docker image☆16Jan 16, 2023Updated 3 years ago
- Programming for Biology @ CSHL 2023☆14Oct 17, 2025Updated 5 months ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆23Feb 28, 2023Updated 3 years ago
- deploy a snakemake pipeline directly from version control (under development)☆25Mar 12, 2026Updated last month
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆23Jan 15, 2026Updated 2 months ago
- A tool to identify CLIP-seq peaks☆72Oct 31, 2025Updated 5 months ago
- A tool for Read Multi-Mapper Resolution☆24Feb 15, 2017Updated 9 years ago
- EasyFigAssembler simplifies the assembly of publication-quality scientific figures. It helps free scientists from technical burdens, so w…☆30Dec 28, 2025Updated 3 months ago
- Sashimi plots for RNA-seq data using detected transcripts☆32Mar 19, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- scRNAseq clustering tool☆11Apr 14, 2020Updated 6 years ago
- DEPRECATED Interfaces to common external biological tools from julia scripts and programs☆14Oct 8, 2024Updated last year
- Code and scripts used in analysis of snRNAseq cerebellar cortex atlas☆12Oct 11, 2021Updated 4 years ago
- GCEN: an easy-to-use toolkit for Gene Co-Expression Network analysis and lncRNAs annotation☆22Mar 26, 2022Updated 4 years ago
- ☆10May 22, 2019Updated 6 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆12Aug 5, 2020Updated 5 years ago
- Analysis code and results for dreamlet☆11Jul 18, 2025Updated 8 months ago
- Minimal scripts to reproduce the RADICL-seq analysis of the Nature Communications manuscript☆11Jan 30, 2020Updated 6 years ago
- Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data☆11Jun 7, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Mar 11, 2020Updated 6 years ago
- ☆25Oct 22, 2025Updated 5 months ago
- "Dissecting cell-type composition and activity-dependent transcriptional state in mammalian brains by massively parallel single-nucleus R…☆13Jan 7, 2018Updated 8 years ago
- Short course using RStudio for biological data analysis☆14Jul 7, 2022Updated 3 years ago
- Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models☆22Feb 2, 2026Updated 2 months ago
- ☆41Sep 29, 2022Updated 3 years ago
- scRNA seq analysis using Seurat V3☆13Jun 23, 2021Updated 4 years ago
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆14Jan 18, 2022Updated 4 years ago
- PSI-Sigma☆40Nov 10, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks☆10Feb 16, 2022Updated 4 years ago
- ☆13Mar 1, 2026Updated last month
- A Snakemake-based pipeline for gene mapping in Triticeae.☆11Mar 5, 2022Updated 4 years ago
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 2 years ago
- The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysi…☆17Oct 22, 2021Updated 4 years ago
- ☆12May 22, 2024Updated last year
- A Perl/R pipeline for plotting metagenes☆37Mar 21, 2026Updated 3 weeks ago