ulelab / clipplotr

Related projects ⓘ

Alternatives and complementary repositories for clipplotr

• olarerin / metaPlotR
  A Perl/R pipeline for plotting metagenes
  ☆35Updated 3 years ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆36Updated 2 years ago
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆53Updated 3 years ago
• kundajelab / 3DChromatin_ReplicateQC
  Software to compute reproducibility and quality scores for Hi-C data
  ☆44Updated 5 years ago
• mhammell-laboratory / TElocal
  A package for quantifying transposable elements at a locus level for RNAseq datasets.
  ☆24Updated 2 months ago
• databio / pepatac
  A modular, containerized pipeline for ATAC-seq data processing
  ☆54Updated last week
• OlgaVT / Alternative-Splicing-Tools
  A list of alternative splicing analysis resources
  ☆37Updated last week
• FenyoLab / L1EM
  Estimate locus specific human LINE-1 expression.
  ☆32Updated 2 years ago
• mlbendall / telescope
  Quantification of transposable element expression using RNA-seq
  ☆64Updated 9 months ago
• Henikoff / Cut-and-Run
  ☆30Updated 6 years ago
• sklasfeld / DANPOS3
  Updated DANPOS2 to work with python3
  ☆20Updated 8 months ago
• deLaatLab / pipe4C
  4C-seq processing pipeline
  ☆22Updated 7 months ago
• databio / awesome-atac-analysis
  Links to ATAC-seq analysis tools
  ☆50Updated 3 years ago
• BioinfoUNIBA / REDItools2
  ☆53Updated 3 years ago
• ucagenomix / sicelore
  Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…
  ☆72Updated last year
• andygxzeng / BoneMarrowMap
  A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …
  ☆24Updated 2 weeks ago
• liulab-dfci / MAGeCK
  Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…
  ☆26Updated 3 years ago
• noush-joglekar / scisorseqr
  scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…
  ☆36Updated last year
• ernstlab / full_stack_ChromHMM_annotations
  Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes
  ☆32Updated 4 months ago
• ygidtu / trackplot
  trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…
  ☆76Updated 3 months ago
• dekkerlab / cworld-dekker
  perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)
  ☆64Updated 5 years ago
• mdozmorov / ChIP-seq_notes
  Notes on ChIP-seq and other-seq-related tools
  ☆22Updated 4 months ago
• GoekeLab / proActiv
  Estimation of Promoter Activity from RNA-Seq data
  ☆49Updated 2 years ago
• dozmorovlab / excluderanges
  Genomic coordinates of problematic genomic regions as GRanges
  ☆28Updated 11 months ago
• LiuLabUB / HMMRATAC
  HMMRATAC peak caller for ATAC-seq data
  ☆99Updated last week
• vastgroup / vast-tools
  A toolset for profiling alternative splicing events in RNA-Seq data.
  ☆78Updated 4 months ago
• 3UTR / DaPars2
  Dynamics analysis of Alternative PolyAdenylation from RNA-seq
  ☆50Updated last year
• williamritchie / IRFinder
  Detecting intron retention from RNA-Seq experiments
  ☆53Updated 4 months ago
• ay-lab / dcHiC
  dcHiC: Differential compartment analysis for Hi-C datasets
  ☆62Updated 10 months ago