ulelab / clipplotr
A tool to facilitate comparative visualisation of CLIP data
☆14Updated last year
Alternatives and similar repositories for clipplotr:
Users that are interested in clipplotr are comparing it to the libraries listed below
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- Tutorial Website☆56Updated 4 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- A list of alternative splicing analysis resources☆42Updated 3 months ago
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆36Updated last year
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆25Updated last month
- Publication quality NGS track plotting☆111Updated 2 years ago
- Estimation of Promoter Activity from RNA-Seq data☆50Updated 3 years ago
- ☆59Updated 7 months ago
- Estimate locus specific human LINE-1 expression.☆32Updated 2 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated last year
- HMMRATAC peak caller for ATAC-seq data☆100Updated 3 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆55Updated 2 weeks ago
- Software for Quantifying Interspersed Repeat Expression☆53Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- A Python library to visualize and analyze long-read transcriptomes☆58Updated 11 months ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆56Updated last year
- Genomic coordinates of problematic genomic regions as GRanges☆35Updated 2 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 2 weeks ago
- A tool for the calculation of RNA-editing index for RNA seq data☆40Updated last year
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆57Updated 2 months ago
- Estimate the cis-regulatory activity of transposable element (TEs) subfamilies☆10Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆46Updated 5 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆60Updated last year
- Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcri…☆58Updated 3 weeks ago
- Links to ATAC-seq analysis tools☆60Updated 3 years ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆36Updated 7 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆73Updated 3 years ago