Scripts to import your FeatureCounts output into DEXSeq
☆35Oct 27, 2018Updated 7 years ago
Alternatives and similar repositories for Subread_to_DEXSeq
Users that are interested in Subread_to_DEXSeq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Feb 19, 2021Updated 5 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆33Apr 26, 2024Updated 2 years ago
- Gencode UTR fix☆17Jan 11, 2023Updated 3 years ago
- ☆18Mar 31, 2024Updated 2 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆42Jun 30, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆134Apr 10, 2026Updated 3 months ago
- ☆21Jul 16, 2024Updated 2 years ago
- Transcript quantification import with automatic metadata detection☆72Updated this week
- CLIP Tool Kit (CTK)☆22Apr 28, 2024Updated 2 years ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆68Jul 17, 2026Updated last week
- Isoform-level functional RNA-Seq analysis 🧬☆39Jul 7, 2026Updated 2 weeks ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Jan 6, 2021Updated 5 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Sep 29, 2025Updated 9 months ago
- This is the ensembldb development repository.☆36Jun 6, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Causal Variant Evidence Mapping with Non-parametric resampling☆12Dec 16, 2020Updated 5 years ago
- Workshop • Analysis of RNA-seq data☆38Mar 15, 2024Updated 2 years ago
- PSI-Sigma☆42Nov 10, 2023Updated 2 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆23Apr 16, 2019Updated 7 years ago
- Bead-based single-cell atac processing☆33Jul 6, 2026Updated 2 weeks ago
- ☆24Apr 14, 2022Updated 4 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆28Nov 6, 2021Updated 4 years ago
- ☆14Mar 18, 2016Updated 10 years ago
- Enhanced Chromatin Occupancy (EChO)☆13Jan 8, 2020Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A tool to identify CLIP-seq peaks☆72Oct 31, 2025Updated 8 months ago
- Slides for my talk at RUG Barcelona 2017-06-13☆12Jun 13, 2017Updated 9 years ago
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆45Mar 31, 2026Updated 3 months ago
- ☆306Updated this week
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆21May 29, 2026Updated last month
- ☆42Sep 29, 2022Updated 3 years ago
- A Biking simulator that can be controlled with a real bike connected to an arduino☆11May 31, 2020Updated 6 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆71Nov 14, 2025Updated 8 months ago
- Single Cell RNA PolyA Site Discovery☆11Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- AES-optimized cpuminer☆12Sep 25, 2016Updated 9 years ago
- rnalib: a python-based transcriptomics library☆13Jan 23, 2026Updated 6 months ago
- Prepare Sailfish and Salmon output for downstream analysis☆41Jun 6, 2019Updated 7 years ago
- ☆12Oct 4, 2021Updated 4 years ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆251Updated this week
- Skip the peaks and expose RNA-binding in CLIP data☆10Jul 10, 2026Updated 2 weeks ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆13Nov 24, 2018Updated 7 years ago