vivekbhr / Subread_to_DEXSeqLinks
Scripts to import your FeatureCounts output into DEXSeq
☆34Updated 7 years ago
Alternatives and similar repositories for Subread_to_DEXSeq
Users that are interested in Subread_to_DEXSeq are comparing it to the libraries listed below
Sorting:
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Tutorial Website☆63Updated 5 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆73Updated last year
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 6 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 4 months ago
- ☆42Updated 3 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆96Updated this week
- An R interface to the MEME Suite☆54Updated 3 weeks ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆85Updated last year
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆41Updated 3 years ago
- Genomic coordinates of problematic genomic regions as GRanges☆51Updated last month
- RNA editing tests☆17Updated 5 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆57Updated 4 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆56Updated 3 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 5 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Updated 5 years ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆38Updated last year
- HMMRATAC peak caller for ATAC-seq data☆98Updated last year
- RNA-seq Quantification of Alternative Polyadenylation☆50Updated 6 months ago
- Full-length transcriptome splicing and mutation analysis☆86Updated last year
- Reference transcriptome indices build from kallisto for popular organisms☆45Updated 2 years ago
- R package containing useful functions for mutational signature analysis☆86Updated this week
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆90Updated last year
- Motif manipulation functions for R.☆30Updated 4 months ago
- snakemake workflow for post-processing scATACseq data☆22Updated 5 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆40Updated last year