vivekbhr / Subread_to_DEXSeq
Scripts to import your FeatureCounts output into DEXSeq
☆33Updated 6 years ago
Alternatives and similar repositories for Subread_to_DEXSeq:
Users that are interested in Subread_to_DEXSeq are comparing it to the libraries listed below
- Tutorial Website☆57Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆55Updated this week
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- ☆30Updated 6 years ago
- ☆36Updated 2 years ago
- Pipeline for Cut&Tag analysis☆18Updated 2 months ago
- Genomic coordinates of problematic genomic regions as GRanges☆35Updated 3 months ago
- Links to ATAC-seq analysis tools☆63Updated 3 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- ATAC-seq processing pipeline☆32Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated 2 weeks ago
- An R interface to the MEME Suite☆50Updated 5 months ago
- IDR☆31Updated last year
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆87Updated last week
- A toolkit for QC and visualization of ATAC-seq results.☆68Updated 2 months ago
- Robust Allele Specific Quantification and quality controL☆39Updated 3 years ago
- RNA editing tests☆17Updated 4 years ago
- workshop website on readthedocs☆19Updated last month
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- Detection of differential translated genes using Ribo-seq☆15Updated 3 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 4 months ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆69Updated 2 months ago
- Detecting intron retention from RNA-Seq experiments☆55Updated 8 months ago
- Estimate locus specific human LINE-1 expression.☆33Updated 2 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- Estimation of Promoter Activity from RNA-Seq data☆51Updated 3 years ago
- Assessing the reproducibility of proccessed ChIP-seq peaks☆12Updated 4 years ago
- SingleCell Nanopore sequencing data analysis☆56Updated 3 months ago