CraigIDent / SpliSERLinks
Bioinformatic tool for Splice site Strength Estimation using RNA-seq
☆20Updated 5 months ago
Alternatives and similar repositories for SpliSER
Users that are interested in SpliSER are comparing it to the libraries listed below
Sorting:
- ☆36Updated 3 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆24Updated 2 years ago
- polyApipe☆19Updated 11 months ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆41Updated last year
- Docker for 4DN Hi-C processing pipeline☆61Updated last year
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- ☆12Updated last year
- splicing and feature maps for RBPs☆25Updated 3 years ago
- An Optimized Nested TAD caller for Hi-C data☆25Updated 4 years ago
- Detection and couting alternative TSS in single cells☆16Updated last year
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Updated 5 years ago
- Estimate locus specific human LINE-1 expression.☆39Updated 2 months ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆61Updated 4 months ago
- Full-length transcriptome splicing and mutation analysis☆85Updated last year
- ☆20Updated 6 years ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆52Updated 6 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆41Updated 2 months ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 5 months ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆38Updated last year
- HiCorr: a Hi-C data bias-correction pipeline☆30Updated 9 months ago
- A list of alternative splicing analysis resources☆46Updated 9 months ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- ☆60Updated 5 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆84Updated 4 years ago
- ☆22Updated 3 years ago
- General Use Scripts and Helper functions☆16Updated 7 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 3 months ago
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 6 months ago
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆17Updated 6 months ago