skrakau / PureCLIP
Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data
☆29Updated 3 years ago
Alternatives and similar repositories for PureCLIP:
Users that are interested in PureCLIP are comparing it to the libraries listed below
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 2 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆89Updated last month
- Quantification of transposable element expression using RNA-seq☆68Updated last year
- Analysis pipeline for the GUIDE-seq assay.☆24Updated this week
- Analysis pipeline for the GUIDE-seq assay.☆78Updated last year
- Publication quality NGS track plotting☆111Updated 2 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated 2 years ago
- Estimate locus specific human LINE-1 expression.☆34Updated 2 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆37Updated 3 months ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆17Updated 3 months ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated 4 months ago
- A list of alternative splicing analysis resources☆43Updated last month
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆112Updated 3 months ago
- RiboPlotR package for Ribo-plot☆15Updated last year
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆74Updated 3 years ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆28Updated 4 years ago
- ☆58Updated 3 years ago
- A Python library to visualize and analyze long-read transcriptomes☆62Updated this week
- Public repository for ShapeMapper 2 releases☆34Updated 5 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆62Updated 9 months ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- Tools for analyzing DNA methylation data☆40Updated last week
- Allele-specific alignment sorting☆55Updated 2 years ago
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆30Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 2 months ago
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆31Updated 4 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 11 months ago