CLIP-seq Analysis of Multi-mapped reads
☆32Jul 20, 2021Updated 4 years ago
Alternatives and similar repositories for CLAM
Users that are interested in CLAM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Jan 17, 2019Updated 7 years ago
- ☆13Jun 24, 2016Updated 9 years ago
- A tool to identify CLIP-seq peaks☆72Oct 31, 2025Updated 6 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆72Jul 18, 2025Updated 10 months ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆16Sep 10, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆15Jul 20, 2023Updated 2 years ago
- ☆14Mar 13, 2018Updated 8 years ago
- Skip the peaks and expose RNA-binding in CLIP data☆10Apr 29, 2026Updated 2 weeks ago
- Model-based analysis of APA using 3' end-linked reads☆12Aug 14, 2021Updated 4 years ago
- Lightweight Alignment Based Resolution of Alternative Three Prime Ends☆10Jan 26, 2024Updated 2 years ago
- splicing and feature maps for RBPs☆25Apr 26, 2026Updated 3 weeks ago
- Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)☆20Jun 16, 2022Updated 3 years ago
- polyApipe☆19Feb 10, 2025Updated last year
- 🧪 Optimized protocol for m6A-SAC-seq☆13Jun 16, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆22Jun 17, 2024Updated last year
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆13Apr 5, 2026Updated last month
- Command-line tool for the visualization of splicing events across multiple samples☆141Jun 28, 2024Updated last year
- ☆41Sep 29, 2022Updated 3 years ago
- ☆11Jul 6, 2023Updated 2 years ago
- Peak calling tool for CLIP-seq data☆14Apr 7, 2021Updated 5 years ago
- DLPRB: A Deep Learning Approach for Predicting Protein-RNA Binding☆13Nov 29, 2018Updated 7 years ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Aug 10, 2021Updated 4 years ago
- ChIP-seq peak calling with GC effects adjustment☆10Jul 5, 2018Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Generate signature matrix from single cell data.☆12Apr 13, 2021Updated 5 years ago
- Analysis of RNA epitranscriptome sequencing data with affinity-based shotgun sequencing approach☆10Apr 2, 2020Updated 6 years ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆115Feb 7, 2024Updated 2 years ago
- ChIA-PET, HiChIP, PLAC-Seq data analysis, with linker detection, linker filter, or restriction process for HiChIP, mapping, call cluster …☆22Jul 19, 2024Updated last year
- ENCODE long read RNA-seq pipeline☆52Apr 13, 2026Updated last month
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Jun 13, 2023Updated 2 years ago
- Data visualization with R☆12Dec 12, 2020Updated 5 years ago
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆24Jan 15, 2026Updated 4 months ago
- ORF Quantification pipeline for Alternative Splicing☆16May 11, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆24Updated this week
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆25Dec 2, 2021Updated 4 years ago
- Explore and share your scRNAseq clustering results☆52Sep 6, 2023Updated 2 years ago
- ☆20Sep 28, 2019Updated 6 years ago
- RNA editing tests☆17Sep 24, 2020Updated 5 years ago
- Peak calling and differential methylation for MeRIP-Seq☆36Oct 1, 2024Updated last year
- omniCLIP is a CLIP-Seq peak caller☆16Nov 14, 2020Updated 5 years ago