bowhan / piPipesLinks
piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School
☆61Updated 5 months ago
Alternatives and similar repositories for piPipes
Users that are interested in piPipes are comparing it to the libraries listed below
Sorting:
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last month
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Updated 3 years ago
- tools to find circRNAs in RNA-seq data☆44Updated 8 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year
- Tools for analyzing DNA methylation data☆44Updated last week
- ☆72Updated 2 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Updated 6 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 10 months ago
- Allele-specific alignment sorting☆60Updated 2 years ago
- Publication quality NGS track plotting☆115Updated last month
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 4 months ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆29Updated 3 weeks ago
- DCC/DAC methylation pipeline source☆57Updated 5 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆66Updated last year
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- FEELnc : FlExible Extraction of LncRNA☆90Updated 4 months ago
- BISulfite-seq CUI Toolkit☆68Updated last month
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- ☆59Updated 4 months ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆133Updated last year
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 5 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆81Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- ☆89Updated 5 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year