bowhan / piPipesLinks
piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School
☆60Updated 3 months ago
Alternatives and similar repositories for piPipes
Users that are interested in piPipes are comparing it to the libraries listed below
Sorting:
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- tools to find circRNAs in RNA-seq data☆44Updated 7 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 8 months ago
- A tool for the calculation of RNA-editing index for RNA seq data☆44Updated last year
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated last year
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated 2 months ago
- DCC/DAC methylation pipeline source☆57Updated 5 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- Allele-specific alignment sorting☆58Updated 2 years ago
- Publication quality NGS track plotting☆114Updated 3 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 10 months ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆29Updated 7 months ago
- BISulfite-seq CUI Toolkit☆66Updated 8 months ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 2 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- A versatile aligning pipeline for bisulfite sequencing data☆65Updated 6 years ago
- FEELnc : FlExible Extraction of LncRNA☆90Updated 2 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆49Updated 6 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 6 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 4 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆75Updated 2 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆117Updated 7 months ago
- ☆31Updated 7 years ago
- ☆72Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- Enhanced version of the FastQTL QTL mapper☆68Updated 2 years ago