Systematic analyses of intronic polyadenylation from standard RNAseq data
☆16Sep 10, 2024Updated last year
Alternatives and similar repositories for IPAFinder
Users that are interested in IPAFinder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- polyApipe☆19Feb 10, 2025Updated last year
- CircSplice☆11Feb 27, 2019Updated 7 years ago
- Model-based analysis of APA using 3' end-linked reads☆12Aug 14, 2021Updated 4 years ago
- Lightweight Alignment Based Resolution of Alternative Three Prime Ends☆10Jan 26, 2024Updated 2 years ago
- ☆25Oct 22, 2025Updated 5 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Analyze 3'UTR usage in single-cell data.☆15Sep 25, 2021Updated 4 years ago
- ☆55Aug 1, 2024Updated last year
- apa: research platform for the study of alternative polyadenylation, expressRNA.org☆12Sep 2, 2021Updated 4 years ago
- DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)☆52Oct 16, 2022Updated 3 years ago
- Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks☆10Feb 16, 2022Updated 4 years ago
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆14Jan 21, 2018Updated 8 years ago
- Code for spatial subclone paper☆18Jan 23, 2025Updated last year
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 3 years ago
- ☆15Aug 25, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- RES-Scanner is a software package for genome-wide identification and annotation of RNA-editing sites for any species with matched RNA-Seq…☆12Jul 13, 2016Updated 9 years ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆22Jul 22, 2025Updated 8 months ago
- ☆18Jan 17, 2019Updated 7 years ago
- ☆16Apr 18, 2025Updated 11 months ago
- ☆15Jun 3, 2025Updated 10 months ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆24Dec 2, 2021Updated 4 years ago
- Transcript assembly tool using multiple change-point inference to improve 3'UTR annotation☆13Dec 2, 2022Updated 3 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆46Jan 8, 2026Updated 3 months ago
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆23Jan 15, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆20Sep 28, 2019Updated 6 years ago
- Code for "Single cell transcriptomes from human kidneys reveal the cellular identity of renal tumours"☆27Jun 5, 2018Updated 7 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing