ZhaozzReal / IPAFinderLinks
Systematic analyses of intronic polyadenylation from standard RNAseq data
☆13Updated last year
Alternatives and similar repositories for IPAFinder
Users that are interested in IPAFinder are comparing it to the libraries listed below
Sorting:
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 6 months ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- ☆51Updated last year
- ☆18Updated 4 years ago
- ☆17Updated 2 years ago
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆16Updated 10 months ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Updated 5 years ago
- ☆12Updated last year
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Updated last year
- Model-based analysis of APA using 3' end-linked reads☆10Updated 4 years ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆17Updated 4 years ago
- ☆12Updated 6 years ago
- ☆38Updated last month
- ☆25Updated 2 years ago
- https://molecular-neurogenetics.github.io/truster/☆11Updated 2 months ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 2 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆16Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- ☆17Updated 2 years ago
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Updated 4 years ago
- ☆11Updated 2 months ago
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Updated 2 years ago
- ☆24Updated last year
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆22Updated 6 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago