Systematic analyses of intronic polyadenylation from standard RNAseq data
☆16Sep 10, 2024Updated last year
Alternatives and similar repositories for IPAFinder
Users that are interested in IPAFinder are comparing it to the libraries listed below
Sorting:
- CircSplice☆12Feb 27, 2019Updated 7 years ago
- polyApipe☆19Feb 10, 2025Updated last year
- Lightweight Alignment Based Resolution of Alternative Three Prime Ends☆10Jan 26, 2024Updated 2 years ago
- Model-based analysis of APA using 3' end-linked reads☆12Aug 14, 2021Updated 4 years ago
- apa: research platform for the study of alternative polyadenylation, expressRNA.org☆12Sep 2, 2021Updated 4 years ago
- Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks☆10Feb 16, 2022Updated 4 years ago
- Analyze 3'UTR usage in single-cell data.☆15Sep 25, 2021Updated 4 years ago
- ☆25Oct 22, 2025Updated 4 months ago
- ☆54Aug 1, 2024Updated last year
- ☆16Apr 18, 2025Updated 10 months ago
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 3 years ago
- Code for spatial subclone paper☆16Jan 23, 2025Updated last year
- ☆15Jun 3, 2025Updated 8 months ago
- Transcript assembly tool using multiple change-point inference to improve 3'UTR annotation☆13Dec 2, 2022Updated 3 years ago
- DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)☆52Oct 16, 2022Updated 3 years ago
- RES-Scanner is a software package for genome-wide identification and annotation of RNA-editing sites for any species with matched RNA-Seq…☆13Jul 13, 2016Updated 9 years ago
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆14Jan 21, 2018Updated 8 years ago
- ☆17Sep 16, 2024Updated last year
- A tool for the calculation of RNA-editing index for RNA seq data☆45Jan 8, 2026Updated last month
- ☆15Aug 25, 2022Updated 3 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Nov 7, 2025Updated 3 months ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆18May 25, 2021Updated 4 years ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆22Jul 22, 2025Updated 7 months ago
- ☆18Jan 17, 2019Updated 7 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆24Dec 2, 2021Updated 4 years ago
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆23Jan 15, 2026Updated last month
- binned motif enrichment analysis and visualisation☆45Jan 27, 2026Updated last month
- Snakemake pipeline for microexon discovery and quantification☆20Jan 16, 2025Updated last year
- ☆20Sep 28, 2019Updated 6 years ago
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆22Dec 18, 2025Updated 2 months ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Mar 23, 2022Updated 3 years ago
- Code for "Single cell transcriptomes from human kidneys reveal the cellular identity of renal tumours"☆27Jun 5, 2018Updated 7 years ago
- ☆64Sep 19, 2025Updated 5 months ago
- splicing and feature maps for RBPs☆25Apr 19, 2022Updated 3 years ago
- hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data☆13Jul 12, 2024Updated last year
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆11Mar 2, 2023Updated 2 years ago
- ☆60Jul 17, 2025Updated 7 months ago
- ☆34Nov 14, 2025Updated 3 months ago
- ☆12Dec 14, 2021Updated 4 years ago