awjga / PORE-cupineLinks
First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing
☆14Updated 2 years ago
Alternatives and similar repositories for PORE-cupine
Users that are interested in PORE-cupine are comparing it to the libraries listed below
Sorting:
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆23Updated 2 years ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆41Updated last year
- Long-read Isoform Quantification and Analysis☆38Updated 5 months ago
- ☆36Updated 2 years ago
- An analysis pipeline for Nanopore direct-RNA sequencing☆13Updated last month
- Simple library/pipeline to generate and handle Hi-C data.☆38Updated 9 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- ☆34Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last month
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆13Updated last month
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 4 years ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 2 years ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Updated 4 years ago
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- Long read to rMATS☆32Updated 2 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆35Updated 6 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 11 months ago
- ☆29Updated last year
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated last month
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆63Updated 3 weeks ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆23Updated 2 years ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆26Updated 4 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 10 months ago
- processing 10x genomics reads☆26Updated 5 years ago
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆32Updated last month
- Blazing fast toolkit to work with .hic and .cool files☆38Updated this week
- Splits fastq files evenly☆22Updated 5 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 10 months ago