kaitlin309 / PRIESSTESS
☆11Updated 11 months ago
Related projects ⓘ
Alternatives and complementary repositories for PRIESSTESS
- Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks☆9Updated 2 years ago
- ☆16Updated 8 months ago
- Computational Optimization of DNA Activity (CODA)☆39Updated 2 months ago
- Modelling RBP binding preferences to predict RPB binding sites☆11Updated last year
- Identifying genome-wide translated open reading frames using ribosome profiling☆21Updated last year
- A suite of tools for evolutionary and functional analysis of microRNA binding sites http://www.targetscan.org☆40Updated 6 years ago
- ☆38Updated 2 years ago
- Comprehensive and scalable differential splicing analyses☆13Updated 5 months ago
- ☆11Updated 4 years ago
- Molecular interactions inference from single-cell multi-omics data☆22Updated 2 weeks ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆14Updated 4 months ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆54Updated last year
- optimization of ribosome P-site positioning in ribosome profiling data☆45Updated 10 months ago
- Code for reproducing the Sei manuscript results☆15Updated 2 years ago
- Relative Expression Ordering Analysis (REOA) package☆20Updated 2 years ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆15Updated last year
- Improved Ribo-seq enables identification of cryptic translation events☆10Updated 6 years ago
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆26Updated 7 months ago
- Motif Scan and Enrichment Analysis (MoSEA)☆16Updated 4 years ago
- ☆15Updated 2 months ago
- Quantification of transposable element expression using RNA-seq☆64Updated 9 months ago
- A continually expanding collection of RNA-seq tools☆46Updated last month
- ☆14Updated 3 months ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆23Updated 2 years ago
- ☆11Updated 10 months ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆28Updated 3 years ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆12Updated 3 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 6 months ago
- ☆37Updated 4 years ago