Alternatives and similar repositories for PRIESSTESS:

Users that are interested in PRIESSTESS are comparing it to the libraries listed below

• xryanglab / RiboMiner
  a toolset for mining multi-dimensional features of the translatome with ribosome profiling data
  ☆17Updated 3 months ago
• CraigIDent / SpliSER
  Bioinformatic tool for Splice site Strength Estimation using RNA-seq
  ☆16Updated this week
• mhorlacher / rbpnet
  ☆18Updated last year
• kkrismer / transite
  RNA-binding protein motif analysis
  ☆11Updated 9 months ago
• zhejilab / RibORF
  Identifying genome-wide translated open reading frames using ribosome profiling
  ☆23Updated last year
• YeoLab / merge_peaks
  Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks
  ☆9Updated 3 years ago
• YeoLab / eCLIP
  ☆37Updated 2 years ago
• erhard-lab / price
  Improved Ribo-seq enables identification of cryptic translation events
  ☆13Updated 7 years ago
• FunctionLab / sei-manuscript
  Code for reproducing the Sei manuscript results
  ☆16Updated 3 years ago
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆52Updated 2 months ago
• tgac-vumc / BLADE
  BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data
  ☆27Updated last year
• bernardo-de-almeida / DeepSTARR
  Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…
  ☆63Updated 2 years ago
• YeoLab / skipper
  Skip the peaks and expose RNA-binding in CLIP data
  ☆9Updated 5 months ago
• GuanLab / Anchor
  This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge
  ☆20Updated 4 years ago
• saeyslab / moduledetection-evaluation
  ☆32Updated 3 years ago
• bgudenas / DeepLncRNA
  ☆11Updated 5 years ago
• dpeerlab / magic
  MAGIC - imputation and de-noising single-cell RNA seq data sets
  ☆27Updated 5 years ago
• SUwonglab / PECA
  PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data
  ☆43Updated last year
• zhipenglu / CRSSANT
  Package for analyzing RNA crosslinking and proximity ligation data (PARIS and beyond)
  ☆12Updated last year
• smaslova / AI-TAC
  ☆27Updated last year
• KlugerLab / ALRA
  Imputation method for scRNA-seq based on low-rank approximation
  ☆74Updated last year
• aidenlab / straw
  Extract data quickly from Juicebox via straw
  ☆68Updated last month
• VRam142 / combinatorialHiC
  Scripts + resources for analyzing combinatorial Hi-C data
  ☆30Updated 5 years ago
• wassermanlab / ExplaiNN
  ExplaiNN: interpretable and transparent neural networks for genomics
  ☆47Updated last month
• skrakau / PureCLIP
  Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data
  ☆29Updated 3 years ago
• smithlabcode / ribotricer
  A tool for accurately detecting actively translating ORFs from Ribo-seq data
  ☆37Updated 3 months ago
• xiongxslab / Translatomer
  ☆20Updated 2 months ago
• liulab-dfci / MAGeCK
  Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…
  ☆28Updated 4 years ago
• BackofenLab / RNAProt
  Modelling RBP binding preferences to predict RPB binding sites
  ☆11Updated last year
• comprna / MoSEA
  Motif Scan and Enrichment Analysis (MoSEA)
  ☆16Updated 4 years ago