Alternatives and similar repositories for m6A-SACseq

Users that are interested in m6A-SACseq are comparing it to the libraries listed below

• AngelCampos / txtools
  An R package to process and analyze transcriptomic data
  ☆18Updated 4 months ago
• YeoLab / rbp-maps
  splicing and feature maps for RBPs
  ☆25Updated 3 years ago
• canzarlab / McSplicer
  ☆11Updated 3 years ago
• kkrismer / transite
  RNA-binding protein motif analysis
  ☆11Updated 2 weeks ago
• zhejilab / RibORF
  Identifying genome-wide translated open reading frames using ribosome profiling
  ☆23Updated 2 years ago
• CraigIDent / SpliSER
  Bioinformatic tool for Splice site Strength Estimation using RNA-seq
  ☆19Updated 2 months ago
• ayshwaryas / ddqc_R
  ☆11Updated 2 years ago
• scottzijiezhang / RADAR
  The project for analyzing differential methylation of MeRIP-seq data
  ☆22Updated 2 years ago
• splicebox / MntJULiP
  Comprehensive and scalable differential splicing analyses
  ☆17Updated 7 months ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆37Updated 3 weeks ago
• Xinglab / PEGASAS
  Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)
  ☆20Updated 3 years ago
• mbassalbioinformatics / ChIP-AP
  An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis
  ☆22Updated last year
• tianshilu / QBRC-Neoantigen-Pipeline
  QBRC Neoantigen calling pipeline with CSiN calculation embedded
  ☆24Updated 3 years ago
• ed-lau / jcast
  Junction centric alternative splicing translator
  ☆20Updated 2 years ago
• FunctionLab / sei-manuscript
  Code for reproducing the Sei manuscript results
  ☆17Updated 3 years ago
• YangLab / CLEAR
  direct comparison of circular and linear RNA expression
  ☆22Updated 4 years ago
• YangLab / RADAR
  RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.
  ☆20Updated last month
• Vivianstats / AIDE
  AIDE: annotation-assisted isoform discovery and quantification from RNA-seq data
  ☆14Updated 3 years ago
• comprna / MoSEA
  Motif Scan and Enrichment Analysis (MoSEA)
  ☆17Updated 5 years ago
• Ruitulyu / KAS-Analyzer
  New computational framework to process and analyze KAS-seq and spKAS-seq data.
  ☆15Updated last year
• mcvickerlab / varCA
  Use an ensemble of variant callers to call variants from ATAC-seq data
  ☆23Updated 5 months ago
• pathint / reoa
  Relative Expression Ordering Analysis (REOA) package
  ☆21Updated 2 years ago
• aertslab / PUMATAC
  Pipeline for Universal Mapping of ATAC-seq
  ☆25Updated 3 weeks ago
• hemberg-lab / VASAseq_2022
  This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022
  ☆23Updated 3 years ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆39Updated 3 years ago
• JiaqiLiZju / Nvwa
  ☆35Updated 3 years ago
• songlab-cal / scquint
  ☆18Updated last year
• lhqing / ALLCools
  Toolkit for single-cell DNA methylation analysis.
  ☆42Updated this week
• ernstlab / mouse_fullStack_annotations
  mouse_fullStack_annotations
  ☆12Updated 2 years ago
• gagneurlab / absplice
  ☆39Updated 3 months ago