mnsmar / clipseqtoolsLinks
A suite for the analysis of CLIP-Seq datasets.
☆12Updated 3 years ago
Alternatives and similar repositories for clipseqtools
Users that are interested in clipseqtools are comparing it to the libraries listed below
Sorting:
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆59Updated last month
- Differential ATAC-seq toolkit☆27Updated last year
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 10 months ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Short example showing how to calculate and plot a 2D t-SNE projection from mass cytometry data in R☆17Updated 9 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Updated 7 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆38Updated last year
- Read HOMER motif analysis output in R.☆16Updated 7 years ago
- A small R package to make sequencing read coverage plots in R.☆38Updated 2 years ago
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Updated 7 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- ☆19Updated 7 years ago
- ☆23Updated 5 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆14Updated 11 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- ☆13Updated 6 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- Transcript quantification import with automatic metadata detection☆68Updated last month
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 5 years ago
- Create QC and summary reports for Alevin output☆32Updated 2 months ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago