A suite for the analysis of CLIP-Seq datasets.
☆12Jan 31, 2022Updated 4 years ago
Alternatives and similar repositories for clipseqtools
Users that are interested in clipseqtools are comparing it to the libraries listed below
Sorting:
- A tool to identify CLIP-seq peaks☆71Oct 31, 2025Updated 4 months ago
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- "Dissecting cell-type composition and activity-dependent transcriptional state in mammalian brains by massively parallel single-nucleus R…☆13Jan 7, 2018Updated 8 years ago
- Genome databases generation pipeline for ngs.plot and region_analysis.☆18Sep 8, 2015Updated 10 years ago
- A collection of perl scripts for NGS analysis☆17Oct 2, 2024Updated last year
- LEGACY: Git commands to keep a Git repository and Bioconductor SVN in sync☆10Oct 17, 2016Updated 9 years ago
- CircSplice☆12Feb 27, 2019Updated 7 years ago
- Code to accompany publication on cell free chromatin immunoprecipitation (cfChIP)☆13Jun 29, 2025Updated 8 months ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Aug 10, 2021Updated 4 years ago
- Read HOMER motif analysis output in R.☆17Mar 1, 2018Updated 8 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆38Aug 4, 2022Updated 3 years ago
- CLIP Tool Kit (CTK)☆21Apr 28, 2024Updated last year
- omniCLIP is a CLIP-Seq peak caller☆16Nov 14, 2020Updated 5 years ago
- Code and manuscript files for Aaron and Karsten's deconvolution paper.☆16Nov 18, 2018Updated 7 years ago
- RAGE-seq scripts☆18Aug 30, 2021Updated 4 years ago
- Fully Automated and Standardized (FAST) iCLIP analysis pipeline.☆22Oct 7, 2017Updated 8 years ago
- SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and he…☆87May 11, 2022Updated 3 years ago
- 学堂在线 课程视频及字幕 aria2下载脚本☆21Aug 27, 2017Updated 8 years ago
- Unsupervised correction of gene independent cell responses to CRISPR-cas9☆54Apr 28, 2023Updated 2 years ago
- Genetics training camp☆21Sep 8, 2020Updated 5 years ago
- A tool for Read Multi-Mapper Resolution☆24Feb 15, 2017Updated 9 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆61Aug 30, 2022Updated 3 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Sep 23, 2025Updated 5 months ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Jan 6, 2021Updated 5 years ago
- HMMRATAC peak caller for ATAC-seq data☆97Nov 12, 2024Updated last year
- Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import☆28Oct 30, 2025Updated 4 months ago
- ☆32Jul 20, 2018Updated 7 years ago
- Ultra-fast 5' and 3' demultiplexer☆29Apr 23, 2024Updated last year
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Mar 11, 2020Updated 5 years ago
- Python 图片爬虫☆32Dec 17, 2017Updated 8 years ago
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆199Jan 30, 2026Updated last month
- Differential ATAC-seq toolkit☆28Dec 21, 2023Updated 2 years ago
- R package for WebGestalt☆38Dec 5, 2025Updated 2 months ago
- Perl scripts for analysis RIC-seq data☆11Feb 6, 2020Updated 6 years ago
- A deep learning framework for synaptic event detection☆17Feb 11, 2026Updated 2 weeks ago
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆32Mar 21, 2019Updated 6 years ago
- ☆10Jul 21, 2021Updated 4 years ago
- Designs for 3D printed parts that were developed in the Zhuang Lab.☆11Dec 2, 2020Updated 5 years ago
- protein embedding project☆12May 3, 2018Updated 7 years ago