mnsmar / clipseqtools
A suite for the analysis of CLIP-Seq datasets.
☆12Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for clipseqtools
- deepStats: a stastitical toolbox for deeptools and genomic signals☆32Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆24Updated 3 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated 7 months ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Transcript quantification import with automatic metadata detection☆67Updated last month
- Differential ATAC-seq toolkit☆27Updated 11 months ago
- JAMM Peak Finder for Sequencing Datasets☆28Updated 4 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 5 months ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Updated 8 years ago
- Create QC and summary reports for Alevin output☆31Updated 2 weeks ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- Single cell interactive plotting tools☆23Updated 4 years ago
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆25Updated 3 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆21Updated 5 years ago
- Chromatin segmentation in R☆19Updated 6 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 5 years ago
- interactive plots for differential expression analysis☆25Updated 2 months ago
- Flexible Bayesian inference of mutational signatures☆33Updated last year
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 8 months ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 5 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 5 years ago
- ☆13Updated 6 years ago
- ☆19Updated 7 years ago
- Differential expression and allelic analysis, nonparametric statistics☆27Updated last year
- Short example showing how to calculate and plot a 2D t-SNE projection from mass cytometry data in R☆17Updated 9 years ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆30Updated this week