mnsmar / clipseqtoolsLinks
A suite for the analysis of CLIP-Seq datasets.
☆12Updated 3 years ago
Alternatives and similar repositories for clipseqtools
Users that are interested in clipseqtools are comparing it to the libraries listed below
Sorting:
- Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆47Updated 3 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- Transcript quantification import with automatic metadata detection☆67Updated last week
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 weeks ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- ATAC-seq lab for BIOINF545☆24Updated 7 months ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Normalization for single cell RNA-seq data☆48Updated 3 months ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 4 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- Identify and correct invalid gene symbols☆59Updated 10 months ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- GREAT Analysis - Functional Enrichment on Genomic Regions☆90Updated 6 months ago
- Reactome Pathway Analysis☆43Updated 5 months ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code …☆56Updated 12 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 6 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 6 years ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 6 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- R package to identify genes with differential distributions in single-cell RNA-seq☆33Updated 3 years ago
- ☆55Updated 7 months ago