A suite for the analysis of CLIP-Seq datasets.
☆12Jan 31, 2022Updated 4 years ago
Alternatives and similar repositories for clipseqtools
Users that are interested in clipseqtools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- "Dissecting cell-type composition and activity-dependent transcriptional state in mammalian brains by massively parallel single-nucleus R…☆13Jan 7, 2018Updated 8 years ago
- A tool to identify CLIP-seq peaks☆75Oct 31, 2025Updated last year
- CLIP Tool Kit (CTK)☆22Apr 28, 2024Updated 2 years ago
- LEGACY: Git commands to keep a Git repository and Bioconductor SVN in sync☆10Oct 17, 2016Updated 10 years ago
- hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data☆14Jul 12, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Read HOMER motif analysis output in R.☆18Mar 1, 2018Updated 8 years ago
- CircSplice☆11Feb 27, 2019Updated 7 years ago
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- 学堂在线 课程视频及字幕 aria2下载脚本☆21Aug 27, 2017Updated 9 years ago
- omniCLIP is a CLIP-Seq peak caller☆16Nov 14, 2020Updated 5 years ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Aug 10, 2021Updated 5 years ago
- Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import☆31Apr 28, 2026Updated 6 months ago
- Code to accompany publication on cell free chromatin immunoprecipitation (cfChIP)☆14Jun 29, 2025Updated last year
- A collection of perl scripts for NGS analysis☆17Oct 2, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Genome databases generation pipeline for ngs.plot and region_analysis.☆17Sep 8, 2015Updated 11 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆38Aug 4, 2022Updated 4 years ago
- A tool for Read Multi-Mapper Resolution☆25Feb 15, 2017Updated 9 years ago
- R package for WebGestalt☆38Aug 10, 2026Updated 2 months ago
- Course materials for the edX Data Analysis for Genomics☆36May 23, 2015Updated 11 years ago
- Python 图片爬虫☆34Dec 17, 2017Updated 8 years ago
- Rosalind Bioinformatics Problems☆33Mar 27, 2015Updated 11 years ago
- ☆31May 28, 2019Updated 7 years ago
- example of shiny plots which react to clicking on points☆11Jun 18, 2015Updated 11 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Mar 23, 2022Updated 4 years ago
- RAGE-seq scripts☆18Aug 30, 2021Updated 5 years ago
- Bedfile perturbation tool☆17Mar 6, 2026Updated 7 months ago
- An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome☆10Jan 25, 2019Updated 7 years ago
- Fully Automated and Standardized (FAST) iCLIP analysis pipeline.☆21Oct 7, 2017Updated 9 years ago
- CapR calculates probabilities that each RNA base position is located within each secondary structural context for long RNA sequences.☆10Oct 10, 2020Updated 6 years ago
- RNA-binding protein motif analysis☆11Sep 29, 2025Updated last year
- apa: research platform for the study of alternative polyadenylation, expressRNA.org☆12Sep 2, 2021Updated 5 years ago
- Napari plugin for the reconstruction of Structured Illumination microscopy (SIM) data☆13Nov 4, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Unsupervised correction of gene independent cell responses to CRISPR-cas9☆55Apr 28, 2023Updated 3 years ago
- Peak calling tool for CLIP-seq data☆14Apr 7, 2021Updated 5 years ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Mar 11, 2020Updated 6 years ago
- Cheatsheets for the MITx Data Science & Statistics Capstone Exams☆10Apr 29, 2022Updated 4 years ago
- SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and he…☆88May 11, 2022Updated 4 years ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆14Feb 21, 2023Updated 3 years ago
- UC2 micrometer stage☆12Jul 5, 2021Updated 5 years ago