Alternatives and similar repositories for CisRegModels:

Users that are interested in CisRegModels are comparing it to the libraries listed below

• mhorlacher / rbpnet
  ☆18Updated 11 months ago
• goodarzilab / SwitchFinder
  ☆15Updated 7 months ago
• ekernf01 / perturbation_benchmarking
  Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.
  ☆17Updated last month
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆26Updated 3 weeks ago
• XSLiuLab / Seq2Neo
  Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction
  ☆21Updated 2 years ago
• julianeweller / MinsePIE
  Modelling insertion efficiency for Prime Insertion Experiments
  ☆13Updated 10 months ago
• jzhoulab / puffin_manuscript
  ☆17Updated 4 months ago
• AdelmanLab / NIH_scripts
  A collection of perl scripts for NGS analysis
  ☆13Updated 4 months ago
• GfellerLab / PRIME
  PRedictor of IMmunogenic Epitopes
  ☆17Updated 9 months ago
• vagarwal87 / saluki_paper
  Saluki, a method to predict mRNA half-lives from sequence
  ☆22Updated 2 years ago
• hemberg-lab / sc3s
  Single Cell Consensus Clustering with Speed
  ☆20Updated 2 years ago
• YeoLab / rbp-maps
  splicing and feature maps for RBPs
  ☆24Updated 2 years ago
• Seeliglab / 2017---Deep-learning-yeast-UTRs
  Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"
  ☆14Updated 7 years ago
• p-koo / creme-nn
  https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2
  ☆28Updated last month
• bioinformatics-sannio / ncrna-deep
  Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"
  ☆13Updated 3 years ago
• johahi / borzoi-pytorch
  Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.
  ☆38Updated last month
• viannegao / ChromaFold
  ☆23Updated 4 months ago
• PMBio / scNMT-seq
  single-cell Nucleosome Methylation Transcription
  ☆13Updated 6 years ago
• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆23Updated 2 years ago
• klarman-cell-observatory / Riboseq-nuORFs
  ☆11Updated 5 years ago
• matsengrp / phippery
  ☆14Updated 3 months ago
• JiaqiLiZju / Nvwa
  ☆34Updated 2 years ago
• JieZheng-ShanghaiTech / HiCoEx
  A supervised learning model based on Graph Neural Network to predict gene co-expression from chromatin contacts
  ☆11Updated last year
• dylkot / pyWNN
  Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)
  ☆14Updated 3 years ago
• Teichlab / cell2tcr
  Inference of TCR motifs
  ☆29Updated 3 weeks ago
• FunctionLab / sei-manuscript
  Code for reproducing the Sei manuscript results
  ☆16Updated 3 years ago
• MannLabs / proteomesoflife
  python based queries for the proteomesoflife neo4j network database
  ☆13Updated 4 years ago
• mcvickerlab / GenVarLoader
  Dataloader for applying sequence models to personalized genomics
  ☆22Updated this week
• ma-compbio / scGHOST
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment
  ☆20Updated 10 months ago