Alternatives and similar repositories for CisRegModels

Users that are interested in CisRegModels are comparing it to the libraries listed below

• mhorlacher / rbpnet
  ☆18Updated last year
• goodarzilab / SwitchFinder
  ☆19Updated last year
• ekernf01 / perturbation_benchmarking
  Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.
  ☆21Updated 4 months ago
• xiongxslab / Translatomer
  ☆24Updated 4 months ago
• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆26Updated 3 years ago
• PennHui2016 / OpDEA
  A toolkit for optimal workflow recommendation for proteomics data differential expression analysis
  ☆19Updated last year
• jzhoulab / puffin_manuscript
  ☆18Updated last year
• gagneurlab / scooby
  scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.
  ☆51Updated 2 months ago
• wassermanlab / ExplaiNN
  ExplaiNN: interpretable and transparent neural networks for genomics
  ☆49Updated 9 months ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆46Updated 2 years ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• kundajelab / bpnet-manuscript
  BPNet manuscript code.
  ☆12Updated 5 years ago
• MannLabs / proteomesoflife
  python based queries for the proteomesoflife neo4j network database
  ☆14Updated 5 years ago
• karbalayghareh / GraphReg
  Chromatin interaction aware gene regulatory modeling with graph attention networks
  ☆28Updated 2 years ago
• chenhcs / FRoGS
  Functional Embedding of Gene Signatures
  ☆48Updated last year
• FunctionLab / sei-manuscript
  Code for reproducing the Sei manuscript results
  ☆17Updated 3 years ago
• s175573 / DeepCAT
  Deep Learning Method to Identify Cancer Associated TCRs
  ☆46Updated 3 years ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆28Updated 11 months ago
• dylkot / pyWNN
  Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)
  ☆19Updated 4 years ago
• p-koo / creme-nn
  https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2
  ☆32Updated 11 months ago
• crazyhottommy / Machine_learning_drug_discovery
  ☆28Updated 9 months ago
• JanZrimec / DeepExpression
  ☆33Updated 3 years ago
• GreiffLab / immuneSIM
  ☆38Updated 2 years ago
• calico / borzoi-paper
  Analyses related to the Borzoi paper.
  ☆25Updated 3 weeks ago
• GfellerLab / PRIME
  PRedictor of IMmunogenic Epitopes
  ☆25Updated 3 months ago
• XSLiuLab / Seq2Neo
  Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction
  ☆22Updated 2 years ago
• liu-bioinfo-lab / EPCOT
  ☆26Updated 2 years ago
• YeoLab / rbp-maps
  splicing and feature maps for RBPs
  ☆25Updated 3 years ago
• lingfeiwang / normalisr
  Causal inference, differential expression, and co-expression for scRNA-seq
  ☆19Updated 3 weeks ago
• wenduocheng / DNALongBench
  ☆15Updated 3 months ago