Alternatives and similar repositories for CisRegModels

Users that are interested in CisRegModels are comparing it to the libraries listed below

• mhorlacher / rbpnet
  ☆18Updated last year
• jzhoulab / puffin_manuscript
  ☆18Updated last year
• goodarzilab / SwitchFinder
  ☆18Updated last year
• xiongxslab / Translatomer
  ☆24Updated 3 months ago
• ekernf01 / perturbation_benchmarking
  Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.
  ☆21Updated 3 months ago
• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆25Updated 3 years ago
• Sanofi-Public / RiboNN
  RiboNN: predicting translation efficiencies from mRNA sequences
  ☆44Updated 2 months ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• PennHui2016 / OpDEA
  A toolkit for optimal workflow recommendation for proteomics data differential expression analysis
  ☆19Updated last year
• s175573 / DeepCAT
  Deep Learning Method to Identify Cancer Associated TCRs
  ☆47Updated 3 years ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆45Updated 2 years ago
• gagneurlab / scooby
  scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.
  ☆49Updated last month
• wassermanlab / ExplaiNN
  ExplaiNN: interpretable and transparent neural networks for genomics
  ☆49Updated 8 months ago
• karbalayghareh / GraphReg
  Chromatin interaction aware gene regulatory modeling with graph attention networks
  ☆28Updated 2 years ago
• JanZrimec / DeepExpression
  ☆33Updated 3 years ago
• kmayerb / tcrdist3
  flexible CDR based distance metrics
  ☆69Updated this week
• XSLiuLab / Seq2Neo
  Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction
  ☆22Updated 2 years ago
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆55Updated 5 years ago
• GreiffLab / immuneSIM
  ☆38Updated 2 years ago
• calico / borzoi-paper
  Analyses related to the Borzoi paper.
  ☆24Updated last week
• liu-bioinfo-lab / EPCOT
  ☆25Updated 2 years ago
• brineylab / grp-paper
  Code and data used in The Great Repertoire Project
  ☆29Updated 4 years ago
• crazyhottommy / Machine_learning_drug_discovery
  ☆28Updated 8 months ago
• GfellerLab / PRIME
  PRedictor of IMmunogenic Epitopes
  ☆25Updated 2 months ago
• kundajelab / bpnet-manuscript
  BPNet manuscript code.
  ☆12Updated 5 years ago
• dylkot / pyWNN
  Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)
  ☆19Updated 4 years ago
• FunctionLab / sei-manuscript
  Code for reproducing the Sei manuscript results
  ☆17Updated 3 years ago
• vagarwal87 / saluki_paper
  Saluki, a method to predict mRNA half-lives from sequence
  ☆27Updated 3 years ago
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆35Updated 3 years ago
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆24Updated last year