Scripts for building computational models of gene regulation with tensorflow
☆11Jan 21, 2020Updated 6 years ago
Alternatives and similar repositories for CisRegModels
Users that are interested in CisRegModels are comparing it to the libraries listed below
Sorting:
- ☆19Mar 21, 2024Updated 2 years ago
- ☆13Jul 1, 2025Updated 8 months ago
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆22Sep 12, 2025Updated 6 months ago
- ☆12Jan 31, 2023Updated 3 years ago
- Computational Optimization of DNA Activity (CODA)☆67Apr 3, 2025Updated 11 months ago
- A useful tool for shuffling biological sequences while preserving the k-let counts☆14Apr 23, 2024Updated last year
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- Blastocyst-like structures generated from human pluripotent stem cells☆13Sep 25, 2022Updated 3 years ago
- ☆17Apr 9, 2021Updated 4 years ago
- A collection of perl scripts for NGS analysis☆17Oct 2, 2024Updated last year
- scGRO-seq analyses codes☆13Jan 9, 2024Updated 2 years ago
- Prediction of horizontal gene transfer (HGT) using graph convolutional network☆12Apr 25, 2022Updated 3 years ago
- A book for my course☆23Updated this week
- Reproducing result from the paper☆34May 12, 2021Updated 4 years ago
- Repository for modeling PRO-cap data with the BPNet-like model, ProCapNet.☆20Aug 28, 2025Updated 6 months ago
- ☆19Dec 15, 2023Updated 2 years ago
- An R package to write Datalog queries and interact with a Datomic database☆11Aug 12, 2021Updated 4 years ago
- Deep Learning course final project. 12th semester.☆18Apr 24, 2025Updated 10 months ago
- ☆15Jun 3, 2025Updated 9 months ago
- ☆19Oct 21, 2024Updated last year
- Code for learnable topological features for phylogenetic inference via graph neural networks☆10Mar 3, 2023Updated 3 years ago
- 爬取得到APP课程数据☆11Oct 27, 2019Updated 6 years ago
- General Use Scripts and Helper functions☆16Mar 29, 2018Updated 7 years ago
- Species-aware DNA language modeling☆18Jan 25, 2023Updated 3 years ago
- Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)☆20Oct 7, 2021Updated 4 years ago
- ☆18Sep 6, 2022Updated 3 years ago
- Deep learning models to predict enhancers in different Drosophila embryo tissues☆20Dec 10, 2023Updated 2 years ago
- ☆24Jul 29, 2025Updated 7 months ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆19Dec 19, 2025Updated 3 months ago
- Machine learning methods for DNA sequence analysis.☆60Feb 27, 2026Updated 3 weeks ago
- Scripts for building computational models of gene regulation with tensorflow☆27May 3, 2023Updated 2 years ago
- Graphical Representation of Ancestral Sequence Predictions☆12Mar 6, 2023Updated 3 years ago
- ☆20Nov 15, 2020Updated 5 years ago
- Here we introduce the problem of 3D solids classification with a CNN (spheres and octahedra). We implemented a 3D GradCam model, in orde…☆11Nov 25, 2019Updated 6 years ago
- ☆38Oct 16, 2024Updated last year
- Short course introducing R programming in the Tidyverse☆11Oct 22, 2024Updated last year
- Pipeline for Universal Mapping of ATAC-seq☆26Sep 23, 2025Updated 5 months ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆29Dec 22, 2022Updated 3 years ago
- Analysis notebooks for the Covid-19 meta analysis that accompanies the Nature Medicine publication "Single-cell meta-analysis of SARS-CoV…☆25Dec 22, 2020Updated 5 years ago