Alternatives and similar repositories for CisRegModels

Users that are interested in CisRegModels are comparing it to the libraries listed below

• mhorlacher / rbpnet
  ☆18Updated last year
• kundajelab / bpnet-manuscript
  BPNet manuscript code.
  ☆12Updated 4 years ago
• goodarzilab / SwitchFinder
  ☆18Updated 11 months ago
• ekernf01 / perturbation_benchmarking
  Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.
  ☆19Updated 2 months ago
• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆25Updated 2 years ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• xiongxslab / Translatomer
  ☆21Updated 4 months ago
• XSLiuLab / Seq2Neo
  Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction
  ☆21Updated 2 years ago
• PennHui2016 / OpDEA
  A toolkit for optimal workflow recommendation for proteomics data differential expression analysis
  ☆16Updated 8 months ago
• jzhoulab / puffin_manuscript
  ☆17Updated 8 months ago
• GreiffLab / immuneSIM
  ☆38Updated last year
• ketringjoni / SuPreMo
  Pipeline for generating reference and perturbed sequences for input into predictive models.
  ☆11Updated 7 months ago
• karbalayghareh / GraphReg
  Chromatin interaction aware gene regulatory modeling with graph attention networks
  ☆26Updated 2 years ago
• vagarwal87 / saluki_paper
  Saluki, a method to predict mRNA half-lives from sequence
  ☆24Updated 2 years ago
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆17Updated 2 years ago
• GfellerLab / PRIME
  PRedictor of IMmunogenic Epitopes
  ☆22Updated last month
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆27Updated 4 months ago
• MaayanLab / archs4py
  Python package to load and query ARCHS4 data
  ☆23Updated 3 months ago
• pmoris / ImRex
  Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes
  ☆16Updated 2 years ago
• JanZrimec / DeepExpression
  ☆33Updated 2 years ago
• FunctionLab / sei-manuscript
  Code for reproducing the Sei manuscript results
  ☆17Updated 3 years ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆43Updated 2 years ago
• brineylab / grp-paper
  Code and data used in The Great Repertoire Project
  ☆30Updated 4 years ago
• MiraldiLab / maxATAC
  Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
  ☆28Updated 2 months ago
• maxwellsh / DIGDriver
  Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.
  ☆26Updated 2 years ago
• Seeliglab / 2017---Deep-learning-yeast-UTRs
  Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"
  ☆15Updated 7 years ago
• moss-lab / ScanFold
  ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…
  ☆19Updated 2 years ago
• wassermanlab / ExplaiNN
  ExplaiNN: interpretable and transparent neural networks for genomics
  ☆48Updated 2 months ago
• bioinformatics-sannio / ncrna-deep
  Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"
  ☆15Updated 4 years ago
• chenhcs / FRoGS
  Functional Embedding of Gene Signatures
  ☆45Updated last year