tomazc / iCount
iCount, protein-RNA interaction analytics
☆23Updated 3 years ago
Alternatives and similar repositories for iCount:
Users that are interested in iCount are comparing it to the libraries listed below
- optimization of ribosome P-site positioning in ribosome profiling data☆51Updated last month
- Tool package to perform in-silico CRISPR analysis and assessment☆25Updated 11 months ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- ☆15Updated 2 years ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated last year
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- Identifying genome-wide translated open reading frames using ribosome profiling☆22Updated last year
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 11 months ago
- ☆11Updated last week
- RiboPlotR package for Ribo-plot☆15Updated last year
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- ☆26Updated last month
- IDR☆31Updated 2 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated last year
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- New version of JACUSA -> 2.0☆24Updated this week
- An R package to process and analyze transcriptomic data☆17Updated 7 months ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆37Updated 2 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 9 months ago
- ☆38Updated 7 months ago
- Analysis pipeline for the GUIDE-seq assay.☆24Updated 2 months ago
- General Use Scripts and Helper functions☆16Updated 7 years ago
- Motif Scan and Enrichment Analysis (MoSEA)☆16Updated 4 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆34Updated last week
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- visual analysis of your VCF files☆32Updated 2 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆41Updated 2 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆57Updated 4 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆49Updated 4 years ago
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆31Updated 4 years ago