iCount, protein-RNA interaction analytics
☆23Dec 14, 2021Updated 4 years ago
Alternatives and similar repositories for iCount
Users that are interested in iCount are comparing it to the libraries listed below
Sorting:
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Apr 10, 2023Updated 2 years ago
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Dec 1, 2023Updated 2 years ago
- DTU analysis tool inspired by llamas☆12Sep 28, 2025Updated 5 months ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Jul 2, 2023Updated 2 years ago
- ☆40Sep 29, 2022Updated 3 years ago
- General Use Scripts and Helper functions☆16Mar 29, 2018Updated 7 years ago
- ☆20Jul 16, 2024Updated last year
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆23Jan 15, 2026Updated last month
- A set of files to do genomics analysis on python☆18Jun 5, 2025Updated 8 months ago
- Processing and plotting tools for genomics data☆22Jan 31, 2026Updated last month
- Pipeline for Universal Mapping of ATAC-seq☆25Sep 23, 2025Updated 5 months ago
- RNA-Seq pipeline☆35Jul 22, 2015Updated 10 years ago
- hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data☆13Jul 12, 2024Updated last year
- Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files☆116Aug 30, 2021Updated 4 years ago
- icSHAPE pipeline☆31Oct 1, 2015Updated 10 years ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆111Jul 23, 2025Updated 7 months ago
- Fast-ish (and correct!) quantile normalization in Python.☆31Jun 5, 2025Updated 8 months ago
- Predicts if Protein will reside in the protein corona on the surface of engineered nanomaterials☆12Jun 21, 2022Updated 3 years ago
- Ultra-fast 5' and 3' demultiplexer☆29Apr 23, 2024Updated last year
- Differential ATAC-seq toolkit☆28Dec 21, 2023Updated 2 years ago
- Designs for 3D printed parts that were developed in the Zhuang Lab.☆11Dec 2, 2020Updated 5 years ago
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated last month
- Perl scripts for analysis RIC-seq data☆11Feb 6, 2020Updated 6 years ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Aug 10, 2021Updated 4 years ago
- R package wrapper for Istanbul Municipality Open Data Portal☆10Apr 24, 2021Updated 4 years ago
- DO NOT FORK! This repository is outdated. It is only kept as a reference for old forks. Create a clean clone from https://github.com/bioj…☆29Mar 27, 2013Updated 12 years ago
- ☆16Feb 18, 2026Updated last week
- HyFormer: Hybrid Transformer and CNN For Pixel-level Multispectral Image Classification☆15Feb 15, 2023Updated 3 years ago
- Enhanced Chromatin Occupancy (EChO)☆13Jan 8, 2020Updated 6 years ago
- Python implementation of TEISER also capable of using SHAPE structural probing data☆12Jan 7, 2025Updated last year
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated last year
- Repository containing the scripts regarding analyses in Zufferey & Tavernari et al.☆10Feb 22, 2021Updated 5 years ago
- Official code for AL-PINNS: Augmented Lagrangian relaxation method for Physics-Informed Neural Networks☆12Jul 29, 2023Updated 2 years ago
- Implementation of a simple linear regression algorithm in MAMBA☆10Feb 12, 2020Updated 6 years ago
- the analysis script for PrismNet☆10May 17, 2020Updated 5 years ago
- ☆10Jun 25, 2021Updated 4 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- scripts for analyzing data of macrophage development in human☆10Dec 8, 2019Updated 6 years ago
- Multiplexed Shotgun Genotyping☆11Feb 15, 2022Updated 4 years ago