tomazc / iCount
iCount, protein-RNA interaction analytics
☆23Updated 3 years ago
Alternatives and similar repositories for iCount:
Users that are interested in iCount are comparing it to the libraries listed below
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆50Updated last month
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆36Updated 2 months ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆29Updated 3 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 10 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- Tools for analyzing DNA methylation data☆39Updated last month
- Analysis pipeline for the GUIDE-seq assay.☆24Updated last month
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆21Updated this week
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- direct comparison of circular and linear RNA expression☆21Updated 4 years ago
- ☆55Updated 3 years ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆31Updated 3 months ago
- Extract data quickly from Juicebox via straw☆67Updated last year
- Updated DANPOS2 to work with python3☆21Updated last year
- Motif Scan and Enrichment Analysis (MoSEA)☆16Updated 4 years ago
- Lightweight converter between hic and cool contact matrices.☆68Updated 8 months ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆46Updated 5 years ago
- ☆15Updated 2 years ago
- Software for performing UDiTaS sequencing analysis.☆13Updated 2 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- ☆60Updated 7 months ago
- IDR☆31Updated 2 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated 2 weeks ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆80Updated 2 months ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆65Updated 4 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆38Updated 3 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 8 months ago