ulelab / ultraplex

Related projects ⓘ

Alternatives and complementary repositories for ultraplex

• finkelsteinlab / freebarcodes
  FREE Divergence Error-Correcting DNA Barcodes
  ☆8Updated 6 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆41Updated 2 years ago
• srbehera / DRAGEN_Analysis
  ☆26Updated 5 months ago
• aakechin / cutPrimers
  curPrimers is a tool for trimming primer sequences from amplicon based NGS reads
  ☆17Updated 4 years ago
• IrinaVKuznetsova / CirGO
  ☆21Updated 5 months ago
• vpc-ccg / calib
  Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
  ☆38Updated last year
• genemine / iread
  iread
  ☆23Updated 3 years ago
• hoffmangroup / polyidus
  Polyidus provides a framework to catch chimeric DNA sequences with a tale of python
  ☆8Updated last year
• COMBINE-lab / SalmonTools
  Useful tools for working with Salmon output
  ☆35Updated 4 years ago
• chess-genome / chess
  Comprehensive Human Expressed SequenceS
  ☆16Updated 3 months ago
• cortes-ciriano-lab / ReConPlot
  ☆21Updated 2 weeks ago
• ben-laufer / CpG_Me
  A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …
  ☆20Updated 2 years ago
• TrinityCTAT / CTAT-VirusIntegrationFinder
  ☆13Updated 11 months ago
• fulcrumgenomics / python-snakemake-template
  A template repository for Snakemake pipepline(s) and a python command-line toolkit.
  ☆27Updated last month
• sartorlab / methylSig
  R package for DNA methylation analysis
  ☆17Updated 3 months ago
• splicebox / MntJULiP
  Comprehensive and scalable differential splicing analyses
  ☆13Updated 5 months ago
• gagneurlab / absplice
  ☆33Updated 2 months ago
• zhongw2 / GeneTEFlow
  ☆23Updated 3 years ago
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆41Updated 6 months ago
• chizksh / digenome-toolkit2
  Digenome-toolkit ver2.
  ☆15Updated 3 years ago
• Xinglab / lr2rmats
  Long read to rMATS
  ☆31Updated last year
• LappalainenLab / lorals
  ☆33Updated last year
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆27Updated 2 months ago
• Xinglab / isoCirc
  isoCirc
  ☆10Updated 11 months ago
• namphuon / ViFi
  Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.
  ☆27Updated 3 years ago
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆35Updated 3 weeks ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆28Updated this week
• TheJacksonLaboratory / splicing-pipelines-nf
  Repository for the Anczukow-Lab splicing pipeline
  ☆14Updated last month
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆30Updated 2 years ago
• comprna / ORQAS
  ORF Quantification pipeline for Alternative Splicing
  ☆16Updated 3 years ago