ulelab / ultraplexLinks
Ultra-fast 5' and 3' demultiplexer
☆28Updated last year
Alternatives and similar repositories for ultraplex
Users that are interested in ultraplex are comparing it to the libraries listed below
Sorting:
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated last month
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- A script to make downloading of SRA/GEO data easier☆31Updated 2 years ago
- Merging paired-end reads and removing adapters☆46Updated last week
- Fast FASTQ sample demultiplexing in Rust.☆65Updated 4 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- ☆38Updated 2 years ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆36Updated this week
- A tool for projecting genomic alignments to transcriptomic coordinates☆36Updated last year
- Tool package to perform in-silico CRISPR analysis and assessment☆32Updated 3 weeks ago
- A python package and a set of shell commands to handle GTF files☆49Updated last year
- Long read to rMATS☆32Updated 2 years ago
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆10Updated 2 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated 2 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated 3 weeks ago
- Useful tools for working with Salmon output☆38Updated 5 years ago
- IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.☆27Updated 2 years ago
- ☆35Updated last year
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆67Updated 3 weeks ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆42Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 5 months ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆50Updated 7 years ago
- ☆17Updated last month
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 11 months ago
- Processing and plotting tools for genomics data☆21Updated last month
- Evolutionary Transcriptomics with R☆45Updated this week
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆54Updated 7 months ago
- Splits fastq files evenly☆22Updated 5 years ago