ulelab / ultraplexLinks
Ultra-fast 5' and 3' demultiplexer
☆28Updated last year
Alternatives and similar repositories for ultraplex
Users that are interested in ultraplex are comparing it to the libraries listed below
Sorting:
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 3 weeks ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- ☆34Updated last year
- Merging paired-end reads and removing adapters☆46Updated 6 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 11 months ago
- ☆36Updated 2 years ago
- ☆17Updated last month
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆54Updated 6 months ago
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- Fast FASTQ sample demultiplexing in Rust.☆64Updated 3 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆66Updated last week
- Gene Fusion Visualiser☆51Updated 2 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆31Updated last year
- A tool for projecting genomic alignments to transcriptomic coordinates☆36Updated last year
- Human reference genome analysis sets☆55Updated 2 years ago
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆28Updated 3 years ago
- Useful tools for working with Salmon output☆38Updated 5 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 5 months ago
- for visual evaluation of read support for structural variation☆54Updated last year
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated 3 months ago
- An efficient CLI to extract sequences from the SRA☆112Updated last month
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- A python package and a set of shell commands to handle GTF files☆49Updated last year
- A software for calculating telomere length☆71Updated 6 years ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆44Updated 3 months ago
- ☆39Updated 2 months ago
- IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.☆27Updated last year
- ☆33Updated 2 years ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 4 months ago