UcarLab / AMULETLinks
A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.
☆31Updated 2 years ago
Alternatives and similar repositories for AMULET
Users that are interested in AMULET are comparing it to the libraries listed below
Sorting:
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- ☆51Updated last year
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- ☆32Updated 8 months ago
- scWGCNA☆61Updated 2 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆42Updated 4 years ago
- Functional Inference of Gene Regulation☆46Updated last year
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated last year
- SNV calling from single cell sequencing☆109Updated 10 months ago
- ☆38Updated last month
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- ☆34Updated 6 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 8 months ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆77Updated 5 months ago
- Tools for single-cell data processing☆127Updated last year
- Analysis of Paired-Tag datasets☆43Updated last year
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- Create cisTarget databases☆53Updated 3 months ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆78Updated 6 months ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆52Updated last year
- ☆58Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 11 months ago
- ☆30Updated 2 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 3 years ago
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 2 years ago
- Repository for Cibersortx☆60Updated 4 years ago
- ☆47Updated 8 months ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago