Alternatives and similar repositories for AMULET

Users that are interested in AMULET are comparing it to the libraries listed below

• chung-lab / SCAFE
  Single Cell Analysis of Five'Ends
  ☆50Updated last year
• statgen / popscle
  A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…
  ☆58Updated 4 years ago
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆44Updated 5 years ago
• UPSUTER / GEMLI
  ☆33Updated last year
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 3 years ago
• gillislab / MetaNeighbor
  A method to rapidly assess cell type identity using both functional and random gene sets
  ☆39Updated last year
• wenweixiong / MARVEL
  ☆53Updated last year
• atarashansky / SAMap
  SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.
  ☆88Updated last month
• KChen-lab / Monopogen
  SNV calling from single cell sequencing
  ☆118Updated last year
• single-cell-genetics / cellSNP
  Pileup biallelic SNPs from single-cell and bulk RNA-seq data
  ☆82Updated 3 years ago
• spcdot / CopyscAT
  Inferring CNV data from single cell ATAC seq
  ☆25Updated 7 months ago
• ElkonLab / scAPA
  This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.
  ☆24Updated 4 years ago
• MarioniLab / EmbryoTimecourse2018
  Data and analysis scripts for our Embryo Timecourse paper.
  ☆68Updated 6 years ago
• chris-mcginnis-ucsf / MULTI-seq
  R implementation of MULTI-seq sample classification workflow
  ☆65Updated 2 years ago
• wanglabtongji / SCRIP
  SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…
  ☆20Updated last year
• aertslab / create_cisTarget_databases
  Create cisTarget databases
  ☆55Updated 7 months ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆75Updated 5 years ago
• liulab-dfci / lisa2
  ☆33Updated 3 years ago
• immunogenomics / SCENT
  Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
  ☆82Updated 9 months ago
• QuKunLab / APEC
  Single cell epigenomic clustering based on accessibility pattern
  ☆23Updated 3 years ago
• rpolicastro / scProportionTest
  ☆75Updated 2 years ago
• gxiaolab / scAllele
  ☆40Updated 5 months ago
• anders-biostat / MethSCAn
  Python package with CLI for the analysis of single cell methylation data.
  ☆18Updated last year
• nghiavtr / SCmut
  ☆34Updated 6 years ago
• satijalab / PASTA
  ☆21Updated last year
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆51Updated last year
• lrylaarsdam / amethyst
  A comprehensive toolkit for single-cell methylation sequencing data analysis
  ☆31Updated last week
• stjude / ROSE
  ROSE: RANK ORDERING OF SUPER-ENHANCERS
  ☆63Updated 2 months ago
• BMILAB / scAPAtrap
  ☆25Updated 3 months ago
• xryanglab / SCASL
  single-cell clustering based on alternative splicing landscapes
  ☆23Updated last year