UcarLab / AMULETLinks
A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.
☆31Updated 3 years ago
Alternatives and similar repositories for AMULET
Users that are interested in AMULET are comparing it to the libraries listed below
Sorting:
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- ☆53Updated last year
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆24Updated 4 years ago
- SNV calling from single cell sequencing☆118Updated last year
- ☆34Updated 6 years ago
- ☆33Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- single-cell clustering based on alternative splicing landscapes☆23Updated last year
- Functional Inference of Gene Regulation☆51Updated last year
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- scWGCNA☆61Updated 3 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 6 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 5 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆57Updated 4 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated last year
- A comprehensive toolkit for single-cell methylation sequencing data analysis☆31Updated 2 weeks ago
- R implementation of MULTI-seq sample classification workflow☆65Updated 2 years ago
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆86Updated 9 months ago
- A tool for removing doublets from single-cell RNA-seq data☆76Updated 5 years ago
- Tools which deal with multiple single cell measurements☆24Updated 5 months ago
- Tools for single-cell data processing☆131Updated last year
- ☆59Updated last year
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated last year
- ☆37Updated last year
- ☆21Updated last year
- Create cisTarget databases☆55Updated 7 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year