UcarLab / AMULETLinks
A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.
☆31Updated 2 years ago
Alternatives and similar repositories for AMULET
Users that are interested in AMULET are comparing it to the libraries listed below
Sorting:
- Single Cell Analysis of Five'Ends☆50Updated last year
- ☆32Updated 9 months ago
- SNV calling from single cell sequencing☆112Updated 11 months ago
- ☆51Updated last year
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆80Updated 3 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 9 months ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆77Updated 6 months ago
- scWGCNA☆61Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- ☆34Updated 6 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- ☆30Updated 2 years ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated last year
- ☆39Updated last month
- single-cell clustering based on alternative splicing landscapes☆23Updated last year
- ☆58Updated last year
- Functional Inference of Gene Regulation☆48Updated last year
- Tools for single-cell data processing☆127Updated last year
- ☆36Updated last year
- Create cisTarget databases☆53Updated 4 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆82Updated 6 months ago
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 2 years ago
- Tools which deal with multiple single cell measurements☆24Updated 2 months ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 4 years ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆41Updated 3 weeks ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆71Updated 11 months ago