Alternatives and similar repositories for AMULET

Users that are interested in AMULET are comparing it to the libraries listed below

• wenweixiong / MARVEL
  ☆51Updated last year
• statgen / popscle
  A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…
  ☆57Updated 4 years ago
• chung-lab / SCAFE
  Single Cell Analysis of Five'Ends
  ☆50Updated last year
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆45Updated 5 years ago
• UPSUTER / GEMLI
  ☆32Updated 7 months ago
• single-cell-genetics / cellSNP
  Pileup biallelic SNPs from single-cell and bulk RNA-seq data
  ☆80Updated 3 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 2 years ago
• liulab-dfci / lisa2
  ☆30Updated 2 years ago
• immunogenomics / SCENT
  Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
  ☆77Updated 4 months ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆46Updated last year
• nghiavtr / SCmut
  ☆33Updated 6 years ago
• stjude / ROSE
  ROSE: RANK ORDERING OF SUPER-ENHANCERS
  ☆51Updated last year
• KChen-lab / Monopogen
  SNV calling from single cell sequencing
  ☆106Updated 10 months ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆74Updated 4 years ago
• gxiaolab / scAllele
  ☆38Updated 2 weeks ago
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆26Updated 10 months ago
• quadbio / RNAseq_tutorial
  ☆29Updated 10 months ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆36Updated 6 years ago
• atarashansky / SAMap
  SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.
  ☆81Updated last year
• xryanglab / SCASL
  single-cell clustering based on alternative splicing landscapes
  ☆22Updated last year
• gillislab / MetaNeighbor
  A method to rapidly assess cell type identity using both functional and random gene sets
  ☆39Updated 8 months ago
• sandberg-lab / Smart-seq3
  Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).
  ☆54Updated 3 years ago
• colomemaria / epiAneufinder
  R package to detect breakpoints and assign somies to scATAC-seq data
  ☆40Updated 3 weeks ago
• cellgeni / STARsolo
  wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq
  ☆64Updated 3 months ago
• Mayrlab / scUTRquant
  Bioinformatics pipeline for single-cell 3' UTR isoform quantification
  ☆25Updated 9 months ago
• wanglabtongji / SCRIP
  SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…
  ☆20Updated last year
• lkmklsmn / MitoTrace
  ☆18Updated last year
• timoast / sinto
  Tools for single-cell data processing
  ☆126Updated last year
• VCCRI / Sierra
  Discover differential transcript usage from polyA-captured single cell RNA-seq data
  ☆51Updated 2 years ago
• QuKunLab / APEC
  Single cell epigenomic clustering based on accessibility pattern
  ☆23Updated 2 years ago