Karollus / SequenceModelBenchmarkLinks
☆10Updated 2 years ago
Alternatives and similar repositories for SequenceModelBenchmark
Users that are interested in SequenceModelBenchmark are comparing it to the libraries listed below
Sorting:
- Toolset for training quantitative sequence to function models.☆23Updated last year
- A method for analyzing scATAC-seq experiments.☆34Updated 4 months ago
- ☆24Updated last year
- Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromati…☆11Updated last week
- This repository hosts a minimal version of a Python API for BPNet.☆52Updated this week
- High-definition modeling of chromatin + transcriptomics data☆25Updated 6 months ago
- Pipeline to run scE2G☆29Updated last week
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆49Updated last week
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆48Updated 2 weeks ago
- Benchmark of GRNs using the GRETA pipeline☆28Updated last week
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- A python package for chromVAR☆31Updated 2 years ago
- Dataloader for applying sequence models to personalized genomics☆27Updated last week
- ACTIONet single-cell analysis framework☆42Updated last year
- pandasGWAS: a Python package for easy retrieval of GWAS Catalog data☆17Updated last year
- Tools for sgRNA calling in direct capture Perturb-seq data☆37Updated 2 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 4 years ago
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆62Updated 5 years ago
- ☆27Updated 2 years ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated last month
- ☆26Updated 5 months ago
- Reproducing all analyses and figures for the ASAP-seq paper☆29Updated 4 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆29Updated 6 months ago
- ☆26Updated last year
- ☆26Updated 6 months ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆50Updated 9 months ago
- ☆40Updated 5 years ago
- Repository for modeling PRO-cap data with the BPNet-like model, ProCapNet.☆15Updated last month