☆12Feb 6, 2023Updated 3 years ago
Alternatives and similar repositories for SequenceModelBenchmark
Users that are interested in SequenceModelBenchmark are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for the Framepool model☆16Feb 1, 2025Updated last year
- ☆14Jan 23, 2025Updated last year
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- FlashRNA - An Efficient Model for Regulatory Genomics☆19Oct 15, 2025Updated last year
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆94Oct 17, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated last year
- ☆37Jan 27, 2025Updated last year
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆27Jun 26, 2024Updated 2 years ago
- For fine-tuning Enformer using paired WGS & gene expression data☆32Aug 27, 2025Updated last year
- Species-aware DNA language modeling☆19Jan 25, 2023Updated 3 years ago
- ☆25Aug 20, 2024Updated 2 years ago
- Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputatio…☆121Oct 18, 2026Updated last week
- Container class to represent genomic locations and support genomic analysis☆28Updated this week
- GAME was designed for the functional genomics community to create seamless communication across pre-trained models and genomics datasets.…☆23Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Jax code for functional genomics ML☆14Mar 5, 2025Updated last year
- Species-aware DNA language models capture regulatory elements and their evolution☆28Aug 21, 2023Updated 3 years ago
- RNA-seq prediction with deep convolutional neural networks.☆268Sep 30, 2026Updated 3 weeks ago
- ☆11Jun 13, 2024Updated 2 years ago
- Evaluating genomic sequence models for explaining personalized expression variation☆20Dec 6, 2023Updated 2 years ago
- PyTorch implementation of Basenji2.☆22Apr 29, 2025Updated last year
- Biological sequence analysis for the modern age.☆329Oct 20, 2026Updated last week
- A python package that includes a variety of string kernel methods.☆17Jan 7, 2020Updated 6 years ago
- Bioinformatics 2020: FastSK: Fast and Accurate Sequence Classification by making gkm-svm faster and scalable. https://fastsk.readthedocs.…☆21Dec 8, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Apr 12, 2014Updated 12 years ago
- The official repository for the ARSENAL model☆21Jul 3, 2026Updated 3 months ago
- ☆13Jul 5, 2019Updated 7 years ago
- ☆17Sep 8, 2024Updated 2 years ago
- A command-line tool for reading SAM/BAM files and converted them directly to bigwig files.☆25Oct 6, 2026Updated 3 weeks ago
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆19Jun 25, 2025Updated last year
- ☆14Nov 6, 2025Updated 11 months ago
- ☆11Aug 4, 2022Updated 4 years ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆70Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ActiveDriverDB☆12May 1, 2023Updated 3 years ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆31May 11, 2026Updated 5 months ago
- ☆53Mar 22, 2026Updated 7 months ago
- ☆13Jul 6, 2026Updated 3 months ago
- Build DeepSea training dataset from raw data☆32Jul 6, 2023Updated 3 years ago
- ☆15Jun 4, 2023Updated 3 years ago
- ☆17Nov 8, 2024Updated last year