Testing if UMAP/tSNE overfit their intrinsic dimensionality
☆15Jul 31, 2023Updated 2 years ago
Alternatives and similar repositories for umap_tsne_experiment
Users that are interested in umap_tsne_experiment are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆34Jan 3, 2023Updated 3 years ago
- Repository of "Personalization of Logical Models With Multi-Omics Data Allows Clinical Stratification of Patients" paper☆11Dec 2, 2025Updated 6 months ago
- Single-cell Consensus Clusters of Encoded Subspaces☆15Jun 8, 2026Updated last week
- Molecular Dynamic Graph Neural Network☆20Aug 5, 2021Updated 4 years ago
- Scripts related to building major-allele references for Bowtie and Bowtie 2☆13Jun 3, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Annotate 2D point clouds using overlay polygons☆15Jun 19, 2025Updated 11 months ago
- Hierarchical Greedy Graph☆16Jul 3, 2022Updated 3 years ago
- In-depth analysis of normalization and transformation methods for building coexpression networks from RNA-seq data.☆15Aug 4, 2023Updated 2 years ago
- ☆21Sep 8, 2023Updated 2 years ago
- Automatically retry Claude Code sessions when hitting Anthropic subscription rate limits☆107Mar 31, 2026Updated 2 months ago
- Analaysis for the batch correction paper☆12Apr 26, 2025Updated last year
- Single-cell Mutual Information-based Network Engineering Ranger☆25Aug 28, 2025Updated 9 months ago
- A duplicate-free variant of the CIFAR test set.☆14Jan 27, 2021Updated 5 years ago
- Protein common interface databases☆10Apr 13, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A flexible and fast sgRNA counter from FASTQ Files☆11Dec 29, 2025Updated 5 months ago
- Public repository of Google Colab notebooks to use with Phenix☆12Mar 19, 2025Updated last year
- ☆14May 13, 2026Updated last month
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆29May 15, 2024Updated 2 years ago
- Bioinformatics Hub RNAseq snakemake pipeline☆15Jan 30, 2018Updated 8 years ago
- ☆20Apr 12, 2024Updated 2 years ago
- Compute a 2D embedding of a data matrix given supervised class information.☆12Dec 8, 2019Updated 6 years ago
- A fancy book template full of ink perfume.☆16Jul 2, 2019Updated 6 years ago
- f-divergence based t-SNE☆18Oct 9, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A C++ port of the IRLBA algorithm, based on the C code in the R package.☆17May 31, 2026Updated 2 weeks ago
- Data portal for exploring and accessing data☆16Oct 30, 2023Updated 2 years ago
- Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).☆13Jan 12, 2024Updated 2 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- A simple implementation of UMAP, TSNE and GDR across frameworks and libraries☆13Dec 10, 2024Updated last year
- ☆45Oct 30, 2024Updated last year
- Fast algorithms for GLM-PCA.☆16Mar 12, 2025Updated last year
- Systematically learn and evaluate the latent geometry of high-dimensional data, with a focus on scRNAseq analysis☆106Apr 1, 2026Updated 2 months ago
- Identify differentially expressed k-mers between RNA-Seq datasets☆11Mar 1, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Improved Hypergradient optimizers for ML, providing better generalization and faster convergence.☆16Apr 3, 2024Updated 2 years ago
- Whole-cell modeling tutorials☆17Jun 26, 2020Updated 5 years ago
- DTU analysis tool inspired by llamas☆12May 22, 2026Updated 3 weeks ago
- Experimental Code to Render a Voxel Volume using 6 Height Maps (+-XYZ) to define the Object☆20Aug 5, 2015Updated 10 years ago
- Python Bioinformatics Toolkit for CATH (Protein Classification Database @ UCL)☆17Sep 30, 2024Updated last year
- prompt library for calculus resources☆16Sep 1, 2023Updated 2 years ago
- (R) Efficient methods and operators for the sparse matrix classes in 'Matrix' (esp. CSR format or "RsparseMatrix")☆23Jun 21, 2024Updated last year