broadinstitute / epi-SHARE-seq-pipelineLinks
Epigenomics Program pipeline to analyze SHARE-seq data.
☆21Updated 2 months ago
Alternatives and similar repositories for epi-SHARE-seq-pipeline
Users that are interested in epi-SHARE-seq-pipeline are comparing it to the libraries listed below
Sorting:
- ☆27Updated 10 months ago
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆16Updated last year
- ☆49Updated 10 months ago
- Functional Inference of Gene Regulation☆45Updated 11 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 4 months ago
- ☆35Updated 9 months ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated last year
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆68Updated last month
- ☆41Updated 3 weeks ago
- scWGCNA☆60Updated 2 years ago
- Fast motif matching in R☆47Updated last year
- Scripts to reproduce the analysis of the MAESTER paper (https://www.nature.com/articles/s41587-022-01210-8).☆12Updated last year
- ☆32Updated 4 months ago
- Paired Insertion Counting for snATAC-seq data☆17Updated 3 weeks ago
- mutation(barcode) caller for 10x single cell data☆45Updated 4 years ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆36Updated 9 months ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- ☆12Updated 2 years ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆39Updated this week
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- cell type specific, trait-associated gene regulation☆26Updated 2 months ago
- ☆30Updated 2 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆20Updated 9 months ago
- Mapping pipeline for snmC-seq based technologies.☆20Updated last year
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- A method for analyzing scATAC-seq experiments.☆30Updated 3 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆25Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 7 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated last year