broadinstitute / epi-SHARE-seq-pipelineLinks
Epigenomics Program pipeline to analyze SHARE-seq data.
☆22Updated 5 months ago
Alternatives and similar repositories for epi-SHARE-seq-pipeline
Users that are interested in epi-SHARE-seq-pipeline are comparing it to the libraries listed below
Sorting:
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆64Updated last month
- ☆35Updated 11 months ago
- ☆27Updated last year
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆87Updated 4 months ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆77Updated 4 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆26Updated 2 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆74Updated last month
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 4 months ago
- ☆59Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- ☆61Updated 4 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 7 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆56Updated 4 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- scWGCNA☆61Updated 2 years ago
- SNV calling from single cell sequencing☆105Updated 9 months ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆51Updated last year
- ☆51Updated last year
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Toolkit for single-cell DNA methylation analysis.☆42Updated 3 weeks ago
- ☆32Updated 7 months ago
- ☆35Updated 5 months ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- ☆34Updated 6 years ago
- ☆44Updated 3 weeks ago
- ☆42Updated 2 months ago
- Repository for Cibersortx☆61Updated 4 years ago