Alternatives and similar repositories for epi-SHARE-seq-pipeline

Users that are interested in epi-SHARE-seq-pipeline are comparing it to the libraries listed below

• HYsxe / PRINT
  ☆37Updated last year
• minoda-lab / universc
  UniverSC: a flexible cross-platform single-cell data processing pipeline
  ☆46Updated last year
• CostaLab / scopen
  scOpen: single-cell open chromatin analysis via NMF modelling
  ☆28Updated 2 years ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆66Updated 4 months ago
• immunogenomics / SCENT
  Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
  ☆79Updated 7 months ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆49Updated last year
• tgac-vumc / BLADE
  BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data
  ☆29Updated last year
• yal054 / snATACutils
  ☆27Updated last year
• Hoohm / CITE-seq-Count
  A tool that allows to get UMI counts from a single cell protein assay
  ☆86Updated 7 months ago
• yal054 / epiformer
  ☆26Updated 7 months ago
• viannegao / ChromaFold
  ☆30Updated last year
• czbiohub-sf / tabula-sapiens
  Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens
  ☆42Updated 3 months ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 3 years ago
• gaolabtools / scNanoGPS
  Single cell Nanopore sequencing data for Genotype and Phenotype
  ☆54Updated 6 months ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 10 months ago
• vib-singlecell-nf / vsn-pipelines
  A repository of pipelines for single-cell data in Nextflow DSL2
  ☆77Updated 2 years ago
• zhoujt1994 / scHiCluster
  ☆69Updated last week
• UPSUTER / GEMLI
  ☆32Updated 10 months ago
• single-cell-genetics / vireo
  Demultiplexing pooled scRNA-seq data with or without genotype reference
  ☆89Updated 7 months ago
• gxiaolab / scAllele
  ☆39Updated 3 months ago
• colomemaria / epiAneufinder
  R package to detect breakpoints and assign somies to scATAC-seq data
  ☆42Updated 2 weeks ago
• dpeerlab / magic
  MAGIC - imputation and de-noising single-cell RNA seq data sets
  ☆27Updated 6 years ago
• nghiavtr / SCmut
  ☆34Updated 6 years ago
• lhqing / ALLCools
  Toolkit for single-cell DNA methylation analysis.
  ☆43Updated this week
• Papatheodorou-Group / BENGAL
  Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets
  ☆41Updated 4 months ago
• KlugerLab / ALRA
  Imputation method for scRNA-seq based on low-rank approximation
  ☆77Updated last year
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆77Updated 2 months ago
• theislab / AutoGeneS
  ☆61Updated 4 years ago
• cole-trapnell-lab / cicero-release
  ☆59Updated last year
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆45Updated 5 years ago