Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
☆217Feb 2, 2026Updated 2 months ago
Alternatives and similar repositories for chrombpnet
Users that are interested in chrombpnet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- TF MOtif Discovery from Importance SCOres☆175Feb 20, 2026Updated last month
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆179Mar 19, 2026Updated last month
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆89Sep 24, 2025Updated 6 months ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆73Apr 28, 2023Updated 2 years ago
- ☆19Mar 24, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Biological sequence analysis for the modern age.☆272Feb 22, 2026Updated last month
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆97Mar 1, 2025Updated last year
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆322Updated this week
- A framework to score and analyze variant effects genome-wide using ChromBPNet models☆16Mar 2, 2026Updated last month
- This repository hosts a minimal version of a Python API for BPNet.☆56Jan 24, 2026Updated 2 months ago
- ☆27Apr 15, 2025Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year
- ☆66Updated this week
- ☆14Sep 1, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆102Sep 9, 2025Updated 7 months ago
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆33Jan 3, 2023Updated 3 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆128Apr 8, 2026Updated last week
- A method for analyzing scATAC-seq experiments.☆33Jun 20, 2025Updated 9 months ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Aug 30, 2024Updated last year
- deep learning-inspired explainable sequence model for transcription initiation☆103Mar 3, 2025Updated last year
- Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromati…☆12Oct 16, 2025Updated 6 months ago
- Sequential regulatory activity predictions with deep convolutional neural networks.☆467Jan 15, 2026Updated 3 months ago
- ☆38Sep 5, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- RNA-seq prediction with deep convolutional neural networks.☆235Aug 28, 2025Updated 7 months ago
- Multi-omic velocity inference☆118Oct 23, 2024Updated last year
- Single-cell epigenomics analysis tools☆312Mar 13, 2026Updated last month
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆244Mar 23, 2026Updated 3 weeks ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆185Mar 27, 2025Updated last year
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆561Jul 7, 2025Updated 9 months ago
- ☆34Jan 27, 2025Updated last year
- ☆19Oct 21, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆23Dec 10, 2025Updated 4 months ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆446Feb 18, 2025Updated last year
- scOpen: single-cell open chromatin analysis via NMF modelling☆27Feb 4, 2023Updated 3 years ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆96Nov 13, 2025Updated 5 months ago
- OCR-Phenotype Association from Tissue-Aware Conservation Inference Toolkit☆18Dec 3, 2025Updated 4 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆322Apr 27, 2023Updated 2 years ago
- A python extension for quick access to bigWig and bigBed files☆242Jan 14, 2026Updated 3 months ago