Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
☆257Jun 9, 2026Updated 4 months ago
Alternatives and similar repositories for chrombpnet
Users that are interested in chrombpnet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A framework to score and analyze variant effects genome-wide using ChromBPNet models☆21Mar 2, 2026Updated 7 months ago
- Biological sequence analysis for the modern age.☆324Updated this week
- TF MOtif Discovery from Importance SCOres☆193Oct 1, 2026Updated 2 weeks ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆94Oct 2, 2026Updated 2 weeks ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆187Mar 19, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This repository hosts a minimal version of a Python API for BPNet.☆61Jul 19, 2026Updated 2 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆99Jun 10, 2026Updated 4 months ago
- RNA-seq prediction with deep convolutional neural networks.☆267Sep 30, 2026Updated 2 weeks ago
- ☆19Mar 24, 2023Updated 3 years ago
- ☆79May 27, 2026Updated 4 months ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆77Apr 28, 2023Updated 3 years ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆364Oct 7, 2026Updated last week
- ☆52Mar 22, 2026Updated 6 months ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆82Oct 2, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆70Aug 10, 2026Updated 2 months ago
- ☆19Oct 21, 2024Updated last year
- Evaluating genomic sequence models for explaining personalized expression variation☆20Dec 6, 2023Updated 2 years ago
- ☆30Dec 10, 2025Updated 10 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆135Aug 3, 2026Updated 2 months ago
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆105Mar 1, 2025Updated last year
- A method for analyzing scATAC-seq experiments.☆33Jun 20, 2025Updated last year
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆258Aug 3, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Code & documentation for Multiomics and deep learning dissect regulatory syntax in human development (Liu*, Jessa*, Kim*, Ng*, et al, Nat…☆34Jul 17, 2026Updated 3 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year
- Sequential regulatory activity predictions with deep convolutional neural networks.☆477Jan 15, 2026Updated 9 months ago
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆103Sep 9, 2025Updated last year
- ☆27Apr 15, 2025Updated last year
- Single-cell epigenomics analysis tools☆326Sep 12, 2026Updated last month
- ☆37Jan 27, 2025Updated last year
- High-definition modeling of chromatin + transcriptomics data☆26Jan 27, 2026Updated 8 months ago
- Repository for modeling PRO-cap data with the BPNet-like model, ProCapNet.☆22Oct 4, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆199Aug 24, 2026Updated last month
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆267Jan 16, 2026Updated 9 months ago
- Pipeline to run scE2G☆67Updated this week
- Elucidating the Utility of Genomic Elements with Neural Nets☆69Dec 2, 2024Updated last year
- deep learning-inspired explainable sequence model for transcription initiation☆109Mar 3, 2025Updated last year
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆575Jun 26, 2026Updated 3 months ago
- Identifying transcription factor binding sites from neural network contribution scores☆28Aug 26, 2026Updated last month