kundajelab / chrombpnetLinks
Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
☆189Updated 2 months ago
Alternatives and similar repositories for chrombpnet
Users that are interested in chrombpnet are comparing it to the libraries listed below
Sorting:
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆98Updated 2 months ago
- ☆54Updated last month
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆122Updated this week
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆239Updated 4 months ago
- Benchmarking computational single cell ATAC-seq methods☆184Updated 4 years ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆122Updated 6 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆81Updated last year
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- Multi-omic velocity inference☆112Updated last year
- A tool for detecting somatic variants in single cell data☆215Updated last year
- Tools for single-cell data processing☆127Updated last year
- code to run sei and obtain sei and sequence class predictions☆109Updated 2 years ago
- ☆83Updated last week
- Clonotype Neighbor Graph Analysis☆92Updated 2 months ago
- Single-cell epigenomics analysis tools☆298Updated last week
- Efficient genotyping bi-allelic SNPs on single cells☆155Updated 3 weeks ago
- scATAC-seq data analysis tools and papers☆124Updated 4 months ago
- deep learning-inspired explainable sequence model for transcription initiation☆99Updated 8 months ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆85Updated last month
- R package to access DoRothEA's regulons☆153Updated last year
- Test genes for Spatial Variation☆176Updated last year
- Episcanpy: Epigenomics Single Cell Analysis in Python☆148Updated 11 months ago
- Notes on single-cell Hi-C technologies, tools, and data☆84Updated last year
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆77Updated 2 months ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆233Updated last month
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing☆178Updated 3 weeks ago
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆132Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆169Updated 7 months ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆96Updated 6 years ago
- ☆13Updated this week