xryanglab / xtail
Genome-wide assessment of differential translations with ribosome profiling data
☆19Updated this week
Alternatives and similar repositories for xtail:
Users that are interested in xtail are comparing it to the libraries listed below
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆65Updated 2 weeks ago
- A modular, containerized pipeline for ATAC-seq data processing☆57Updated last month
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆49Updated last year
- ☆38Updated 5 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆69Updated 4 months ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆37Updated 3 months ago
- ☆30Updated 6 years ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- IDR☆31Updated 2 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆65Updated 5 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 7 years ago
- ☆68Updated last year
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆38Updated 5 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 2 months ago
- Demultiplexes a fastq.☆44Updated 4 years ago
- Estimate locus specific human LINE-1 expression.☆34Updated 2 years ago
- chia pet analysis software☆25Updated 6 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆30Updated last year
- ATAC-seq processing pipeline☆33Updated 3 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆74Updated 9 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆64Updated 6 months ago