Alternatives and similar repositories for cinaR

Users that are interested in cinaR are comparing it to the libraries listed below

• liuhong-jia / scAnno
  ☆24Updated 2 years ago
• montilab / BS831
  Course Materials for Genomics Data Mining
  ☆22Updated 3 months ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆21Updated 3 months ago
• satijalab / azimuth-references
  ☆22Updated 6 months ago
• jokergoo / cola
  A General Framework for Consensus Partitioning
  ☆61Updated 3 months ago
• dbdimitrov / BingleSeq
  BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses
  ☆21Updated 3 years ago
• madsen-lab / valiDrops
  ☆16Updated last month
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 3 years ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated 11 months ago
• GregorySchwartz / tooManyCellsR
  An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.
  ☆25Updated 5 years ago
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated this week
• randel / MIND
  Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
  ☆45Updated 2 years ago
• BaderLab / MALAT1_threshold
  ☆12Updated 2 months ago
• SCA-IRCM / SingleCellSignalR
  R package for Bioconductor submission
  ☆34Updated 2 years ago
• neurogenomics / reanalysis_Mathys_2019
  A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…
  ☆14Updated last year
• laurenhsu1 / corral
  Dimensionality reduction and batch integration methods for single cell data
  ☆16Updated 2 years ago
• ctlab / LinSeed
  Linseed: LINear Subspace identification for gene Expresion Deconvolution
  ☆29Updated this week
• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆55Updated 4 months ago
• greenelab / miQC
  Flexible, probablistic metrics for quality control of scRNA-seq data
  ☆20Updated 2 years ago
• C3BI-pasteur-fr / UTechSCB-SCHNAPPs
  Shiny app for the analysis of single cell data
  ☆26Updated last month
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆31Updated last year
• HelenaLC / muscat-comparison
  ☆12Updated 11 months ago
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆37Updated 2 years ago
• pachterlab / GFCP_2022
  RNA velocity validation
  ☆22Updated 3 years ago
• dswatson / bioplotr
  Pretty, simple, optionally interactive plots for bioinformatics analysis pipelines
  ☆14Updated 2 years ago
• markrobinsonuzh / cytofWorkflow
  ☆16Updated last year
• pachterlab / concordexR
  Compute the neighborhood consolidation matrix and identify SHRs
  ☆13Updated 3 months ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆45Updated last year
• UCLouvain-CBIO / depmap
  Cancer Dependency Map package
  ☆29Updated 8 months ago
• PoolLab / generecovery
  ☆29Updated 2 years ago