pachterlab / concordexLinks
Identification of spatial homogeneous regions
☆21Updated 5 months ago
Alternatives and similar repositories for concordex
Users that are interested in concordex are comparing it to the libraries listed below
Sorting:
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆57Updated last week
- Python package for Probe set selection for targeted spatial transcriptomics.☆38Updated 6 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆52Updated 3 weeks ago
- CAST package☆40Updated 7 months ago
- Multi-resolution Variational Inference☆22Updated 2 months ago
- ☆38Updated 8 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆25Updated 5 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆32Updated last week
- A repository for benchmarking spatial deconvolution and mapping tools☆33Updated last month
- ☆22Updated 2 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated last year
- ☆19Updated last week
- An R package for performing cell typing in SMI and other single cell data☆37Updated last month
- A modular tool for proportion analysis in single-cell sequencing data☆22Updated last month
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆33Updated this week
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆14Updated last month
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆52Updated 10 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated 11 months ago
- .h5mu files interface for Seurat☆32Updated last year
- ☆25Updated 3 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated 6 months ago
- cell type specific, trait-associated gene regulation☆27Updated 2 months ago
- Stitch multiple Visium slides together☆16Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆35Updated 2 weeks ago
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 7 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆28Updated 3 weeks ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 4 years ago
- Spatially constrained color profiling for visualizing single-cell resolution spatial data☆26Updated 9 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆75Updated 3 months ago