pachterlab / concordex
Identification of spatial homogeneous regions
☆20Updated 2 months ago
Alternatives and similar repositories for concordex:
Users that are interested in concordex are comparing it to the libraries listed below
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆51Updated 2 weeks ago
- Multi-resolution Variational Inference☆22Updated 2 weeks ago
- ☆25Updated 5 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆35Updated 3 months ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆66Updated this week
- ☆21Updated 2 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- CAST package☆31Updated 4 months ago
- Tools to handle IMC data☆23Updated 2 years ago
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆21Updated this week
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆23Updated 2 months ago
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 4 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆48Updated 2 weeks ago
- ☆36Updated 5 months ago
- A repository for benchmarking spatial deconvolution and mapping tools☆33Updated last month
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆25Updated 7 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆33Updated last week
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆52Updated 7 months ago
- .h5mu files interface for Seurat☆28Updated last year
- A modular tool for proportion analysis in single-cell sequencing data☆18Updated last month
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated 3 weeks ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆59Updated 9 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated 3 months ago
- Pipeline for designing custom probes against human genes☆16Updated 4 months ago
- Spatially constrained color profiling for visualizing single-cell resolution spatial data☆24Updated 5 months ago
- An R package for performing cell typing in SMI and other single cell data☆33Updated 3 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆26Updated 6 months ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 3 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆31Updated 9 months ago
- ☆19Updated 5 years ago