pachterlab / concordex
Identification of spatial homogeneous regions
☆20Updated 3 months ago
Alternatives and similar repositories for concordex:
Users that are interested in concordex are comparing it to the libraries listed below
- Python package for Probe set selection for targeted spatial transcriptomics.☆36Updated 5 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆54Updated last month
- Multi-resolution Variational Inference☆22Updated last month
- ☆26Updated 7 months ago
- CAST package☆34Updated 6 months ago
- ☆21Updated 2 years ago
- ☆36Updated 7 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆49Updated this week
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated 2 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated 9 months ago
- A repository for benchmarking spatial deconvolution and mapping tools☆33Updated 3 months ago
- .h5mu files interface for Seurat☆29Updated last year
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆25Updated 4 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated 5 months ago
- Pipeline for designing custom probes against human genes☆16Updated 5 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 5 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated 10 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆34Updated this week
- An R package for performing cell typing in SMI and other single cell data☆34Updated 4 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆19Updated 3 months ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆25Updated 2 years ago
- ☆18Updated this week
- https://sparrow-pipeline.readthedocs.io/en/latest/☆26Updated this week
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆61Updated last week
- Tools for analyzing Slide-seq data☆31Updated last year
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆10Updated last year
- Probabilistic cell segmentation for in situ spatial transcriptomics☆72Updated this week
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆31Updated 3 weeks ago