Identification of spatial homogeneous regions
☆21Oct 6, 2025Updated 6 months ago
Alternatives and similar repositories for concordex
Users that are interested in concordex are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Compute the neighborhood consolidation matrix and identify SHRs☆14Jun 12, 2025Updated 10 months ago
- scVI extension for unspliced RNA☆15May 18, 2025Updated 10 months ago
- ☆12Aug 30, 2024Updated last year
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Nov 27, 2025Updated 4 months ago
- The Monod package fits CME models to sequencing data.☆33Updated this week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- From geospatial to spatial -omics☆102Mar 18, 2026Updated 3 weeks ago
- kallisto index tag extractor☆20Jul 6, 2019Updated 6 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Jan 14, 2024Updated 2 years ago
- Implementation of multiplex Leiden for analysis of spatial omics data☆18Apr 6, 2026Updated last week
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆33Jan 3, 2023Updated 3 years ago
- ☆13Jun 15, 2024Updated last year
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Nov 26, 2023Updated 2 years ago
- This repository contains the code for reproducing all the results and figures from the preprint "Isoform specificity in the mouse primary…☆16Jul 16, 2021Updated 4 years ago
- A pipeline to transform images into valuable analysis items☆18Jun 18, 2025Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Extension of SpatialExperiment with sf☆57Apr 7, 2026Updated last week
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆46Dec 8, 2025Updated 4 months ago
- ☆20May 24, 2025Updated 10 months ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆53Aug 11, 2025Updated 8 months ago
- ☆14Jun 10, 2025Updated 10 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆12Aug 17, 2023Updated 2 years ago
- Model-based Dimensionality Reduction for Single-cell RNA-seq with Generalized Bilinear Models☆13Jul 29, 2025Updated 8 months ago
- RAnking Markers for CEll Segmentation☆12Feb 22, 2022Updated 4 years ago
- ☆47Apr 8, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Annotation and segmentation of MAS-seq data☆20May 25, 2023Updated 2 years ago
- Generate robust DNA barcode sets☆33Feb 6, 2024Updated 2 years ago
- ☆27Feb 10, 2025Updated last year
- Invariant Representation learning☆20Jun 26, 2024Updated last year
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆24Jun 10, 2025Updated 10 months ago
- colosseum system - open source fraction collector for laboratories☆28Mar 8, 2023Updated 3 years ago
- Bayesian Segmentation of Spatial Transcriptomics Data☆202Dec 10, 2024Updated last year
- ☆62Dec 8, 2025Updated 4 months ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆41Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Some sleuth walkthroughs to help you get started☆10Jul 26, 2018Updated 7 years ago
- ☆27May 22, 2025Updated 10 months ago
- home of the bear's lair☆10May 19, 2017Updated 8 years ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Apr 22, 2025Updated 11 months ago
- 3D segmentation for cells and organoids of 3D multichannel images☆32Jun 24, 2025Updated 9 months ago
- Conditional Autoencoders for Multiplexed Pixel Analysis☆18Nov 25, 2022Updated 3 years ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆65Mar 20, 2026Updated 3 weeks ago