A quick recap of widely used differential analyses methods in R for RNA-seq experiments
☆16Dec 7, 2024Updated last year
Alternatives and similar repositories for RNA-seq-differential-analyses-guideline
Users that are interested in RNA-seq-differential-analyses-guideline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)☆16Feb 9, 2026Updated 8 months ago
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆35Jan 3, 2023Updated 3 years ago
- Codes and Data for FFPEsig manuscript☆16Jan 17, 2024Updated 2 years ago
- A comprehensive TypeScript starter pack for modern web development, designed to streamline your project setup with usefull practices.☆15Jun 27, 2025Updated last year
- Neighborhood Non-Negative Matrix Factorization☆11Sep 24, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Gosling☆13Nov 10, 2023Updated 2 years ago
- This repository constitutes SURFY2 and corresponds to the bioRxiv preprint 'Updating the in silico human surfaceome with meta-ensemble le…☆11Feb 12, 2019Updated 7 years ago
- Scalable genomic analysis pipelines, written in WDL☆13Oct 16, 2026Updated 3 weeks ago
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 13 years ago
- Time to learn DSL2☆10Feb 9, 2023Updated 3 years ago
- ☆12Apr 28, 2016Updated 10 years ago
- This is a Claude Code based set of skills that attempt to generate and implement novel ideas, performing data analysis, conducting simula…☆15Jun 13, 2026Updated 4 months ago
- Cell type-specific SVG detection☆10Jan 28, 2026Updated 9 months ago
- Small R package with some functions to visualize DGE results downstream of DESeq2☆12Jul 6, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A tool to annotate human VCF files with PolyPhen2 effect measures☆10Dec 26, 2022Updated 3 years ago
- MATLAB implementation of Gene Set Enrichment Analysis (GSEA) method for finding pathways which can show more complex relation between cha…☆10Sep 7, 2022Updated 4 years ago
- RNA seq analysis using Bioconductor (analysis built on limma, edgeR)☆12Sep 23, 2022Updated 4 years ago
- Scripts for using scanpy☆40Oct 20, 2025Updated last year
- unsupervised concept drift detection☆35Aug 25, 2021Updated 5 years ago
- Reanalysis of the repressive capacity of promoter DNA methylation☆11Feb 14, 2019Updated 7 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆34Apr 26, 2024Updated 2 years ago
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- Tutorials for diffxpy.☆11Nov 1, 2019Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Distinguishing between generic and experiment-specific gene expression signals.☆12Feb 5, 2023Updated 3 years ago
- This RNAseq data analysis tutorial is created for educational purpose☆37Feb 18, 2026Updated 8 months ago
- circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data☆61Oct 28, 2026Updated last week
- ☆10Jan 23, 2021Updated 5 years ago
- Gene Set Enrichment Analysis in Python☆11Oct 26, 2018Updated 8 years ago
- The code used in my article "3.5 years of a relationship in Whatsapp messages".☆39Apr 7, 2020Updated 6 years ago
- CLI to automate Nextflow pipeline testing☆13Dec 15, 2025Updated 10 months ago
- Performs BLAST on compressed proteomic data.☆18Jun 15, 2015Updated 11 years ago
- C implementation of Delaunay Triangulation algorithm, provided with an easy to use GUI.☆11Jan 23, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CNV Rapid Aberration Detection And Reporting☆13Mar 2, 2021Updated 5 years ago
- A pipeline creation tool using Snakemake☆14Updated this week
- Get structured output(JSON) from resumes using GPT and LangChain.☆10Feb 21, 2024Updated 2 years ago
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Jun 5, 2021Updated 5 years ago
- ☆10Sep 14, 2023Updated 3 years ago
- Data cleaning and exploration in Pandas via Jupyter notebook☆10Jun 17, 2019Updated 7 years ago
- Nextflow pipeline to convert VCF files into MAF files.☆10Dec 12, 2025Updated 10 months ago