eonurk / RNA-seq-differential-analyses-guideline
A quick recap of widely used differential analyses methods in R for RNA-seq experiments
☆13Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for RNA-seq-differential-analyses-guideline
- Gene regulatory network containing signed transcription factor-target gene interactions☆61Updated 6 months ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆29Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆24Updated 3 weeks ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆42Updated 3 years ago
- ☆37Updated 4 years ago
- ☆15Updated 5 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆25Updated 7 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆75Updated 2 years ago
- ConsensusTME Gene Sets and R Script☆39Updated 5 months ago
- Scripts for using scanpy☆31Updated 2 months ago
- ☆31Updated 5 years ago
- ☆46Updated last year
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆41Updated 4 months ago
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆29Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆49Updated last year
- A shell to facilitate loading / running CIBERSORT software in structured environments☆26Updated 6 years ago
- SCDC☆42Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆33Updated 3 years ago
- epigenome analysis to rank transcription factors☆30Updated last year
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆41Updated 9 months ago
- R-code used for single-cell RNA-Seq analysis of kidney data.☆17Updated 5 years ago
- MutSig2CV from Lawrence et al. 2014☆30Updated 4 years ago
- Repository for Cibersortx☆51Updated 3 years ago
- ☆37Updated 3 years ago
- An R package to plot maps of clone distributions in somatic evolution☆15Updated 10 months ago
- ☆39Updated 3 years ago
- ☆16Updated 4 months ago
- ☆34Updated 6 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 3 years ago
- scWGCNA☆54Updated 2 years ago