DEIB-GECO / PyGMQLLinks
Python Library for data analysis based on GMQL
☆15Updated 4 years ago
Alternatives and similar repositories for PyGMQL
Users that are interested in PyGMQL are comparing it to the libraries listed below
Sorting:
- GMQL - GenoMetric Query Language☆18Updated 3 years ago
- GO enrichment with python -- pandas meets networkx☆88Updated 5 years ago
- A Python implementation of edgeR for differential expression analysis☆104Updated 6 years ago
- Characterization of Germline variants☆100Updated 3 years ago
- A simple pythonic interface to biomart.☆57Updated 6 years ago
- Python library to access Gene Expression Omnibus Database (GEO)☆158Updated last year
- python access to UCSC genomes database☆136Updated 5 years ago
- A python extension for quick access to bigWig and bigBed files☆239Updated 3 weeks ago
- Python biomart API☆69Updated 2 years ago
- A Python-based EGA download client☆110Updated last year
- [Deprecated, see https://github.com/antigenomics/mirpy and other tools @antigenomics] Post-analysis of immune repertoire sequencing data☆142Updated last year
- TF MOtif Discovery from Importance SCOres☆163Updated last month
- A Python package for pharmacogenomics (PGx) research☆82Updated last month
- Analysis pipeline for the GUIDE-seq assay.☆81Updated 2 years ago
- MOODS: Motif Occurrence Detection Suite☆113Updated 2 years ago
- Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.☆119Updated 8 months ago
- Tools for manipulating biological data, particularly multiple sequence alignments☆159Updated last week
- MyGene.info: A BioThings API for gene annotations☆130Updated 5 months ago
- Simple FASTQ quality assessment using Python☆109Updated 4 years ago
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆328Updated 10 months ago
- Porting DESeq2 into python via rpy2☆67Updated 2 years ago
- Sequana: a set of Snakemake NGS pipelines☆151Updated 2 weeks ago
- Precision HLA typing from next-generation sequencing data☆208Updated last year
- a lightweight db framework for exploring genetic variation.☆323Updated 5 years ago
- main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datase…☆114Updated 3 years ago
- tabix file access with golang using biogo machinery☆10Updated 7 months ago
- Merging, Annotation, Validation, and Illustration of Structural variants☆75Updated 2 years ago
- A modular Hi-C mapping pipeline☆101Updated last year
- Language agnostic RESTful data access to Ensembl data over HTTP☆149Updated last month
- DNA sequencing analysis notes from Ming Tang☆149Updated 2 years ago