maxplanck-ie / 10X_snakepipeLinks
A snakemake pipeline for 10X genomics cellranger
☆21Updated 7 months ago
Alternatives and similar repositories for 10X_snakepipe
Users that are interested in 10X_snakepipe are comparing it to the libraries listed below
Sorting:
- An R interface to the MEME Suite☆52Updated last month
- An R package to analyze single-cell V(D)J data☆28Updated last year
- Lightweight Iterative Gene set Enrichment in R☆57Updated 10 months ago
- Identify and correct invalid gene symbols☆58Updated 8 months ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆89Updated 4 months ago
- workshop website on readthedocs☆19Updated 3 weeks ago
- Scripts to install as a Bioconda package for making workflows☆18Updated 10 months ago
- Peak caller for CUT&TAG data☆28Updated 2 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated last month
- binned motif enrichment analysis and visualisation☆41Updated last week
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- ☆38Updated 2 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 5 months ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆53Updated 3 years ago
- 🧬 Gene analysis toolkit based on R☆57Updated 7 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 7 months ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- R package wrapping bedtools☆42Updated 4 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆55Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…☆28Updated last year
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆32Updated 5 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- ATAC-seq lab for BIOINF545☆24Updated 5 months ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week