maxplanck-ie / 10X_snakepipeLinks
A snakemake pipeline for 10X genomics cellranger
☆22Updated 9 months ago
Alternatives and similar repositories for 10X_snakepipe
Users that are interested in 10X_snakepipe are comparing it to the libraries listed below
Sorting:
- workshop website on readthedocs☆20Updated last week
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- An R interface to the MEME Suite☆52Updated 3 months ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- 🧬 Gene analysis toolkit based on R☆57Updated 9 months ago
- ATAC-seq lab for BIOINF545☆24Updated 7 months ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆90Updated 6 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- binned motif enrichment analysis and visualisation☆41Updated 3 weeks ago
- Motif manipulation functions for R.☆30Updated last week
- Snakemake pipeline for running MAJIQ☆23Updated last year
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 5 months ago
- ☆39Updated 3 years ago
- Peak caller for CUT&TAG data☆29Updated 3 years ago
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆28Updated 11 months ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Scripts to install as a Bioconda package for making workflows☆17Updated last year
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆20Updated last year
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 3 months ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- Identify and correct invalid gene symbols☆59Updated 10 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 3 weeks ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago