JHUCCB / ChineseHanSouthGenomeLinks
Gapless, reference-quality Southern Han Chinese genome assembly and annotation
☆12Updated 2 years ago
Alternatives and similar repositories for ChineseHanSouthGenome
Users that are interested in ChineseHanSouthGenome are comparing it to the libraries listed below
Sorting:
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated last month
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Automatically design multiplex PCR primer pairs for diverse templates☆28Updated last year
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- ☆21Updated 9 months ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- ☆20Updated last year
- Ultra-fast, high-performing structural variation (SV) detector☆23Updated 2 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 4 months ago
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆19Updated last year
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Updated 2 years ago
- Immuological gene typing and annotation for genome assembly☆37Updated 4 months ago
- Enabling differential allele-specific analysis☆11Updated 6 months ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated 11 months ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated 11 months ago
- ☆36Updated 2 years ago
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆21Updated 3 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated last year
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- CNV Rapid Aberration Detection And Reporting☆12Updated 4 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆18Updated last year
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆28Updated 2 years ago
- Human pan-genome analysis pipeline☆30Updated 5 years ago
- ☆13Updated 2 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated last month
- ☆16Updated 6 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 7 months ago