Alternatives and similar repositories for ChineseHanSouthGenome

Users that are interested in ChineseHanSouthGenome are comparing it to the libraries listed below

• bbglab / openvariant
  Read, parse and operate different multiple input file formats with OpenVariant
  ☆13Updated 3 months ago
• HKU-BAL / Clair3-RNA
  Clair3-RNA - a long-read small variant caller for RNA sequencing data
  ☆28Updated 4 months ago
• AGIScuipeng / PMPrimer
  Automatically design multiplex PCR primer pairs for diverse templates
  ☆29Updated last year
• aakechin / cutPrimers
  curPrimers is a tool for trimming primer sequences from amplicon based NGS reads
  ☆16Updated 3 months ago
• ETCHING-team / ETCHING
  Ultra-fast, high-performing structural variation (SV) detector
  ☆23Updated 2 years ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆37Updated 5 months ago
• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated 2 years ago
• LappalainenLab / lorals
  ☆36Updated 2 years ago
• Janga-Lab / Penguin
  Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data
  ☆14Updated 3 years ago
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆33Updated 6 months ago
• WGLab / DeepRepeat
  An accurate repeat detection from Nanopore data using deep learning and image techniques
  ☆23Updated 2 years ago
• Runsheng / trackcluster
  An analysis pipeline for Nanopore direct-RNA sequencing
  ☆13Updated last month
• awjga / PORE-cupine
  First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing
  ☆14Updated 2 years ago
• comprna / CHEUI
  Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
  ☆41Updated last year
• gimelbrantlab / Qllelic
  Enabling differential allele-specific analysis
  ☆11Updated 8 months ago
• koszullab / hicstuff
  Simple library/pipeline to generate and handle Hi-C data.
  ☆38Updated 9 months ago
• huangnengCSU / longcallR
  LongcallR is a SNP caller for single molecule long-read RNA-seq data
  ☆63Updated 3 weeks ago
• cschin / Write_A_Genome_Assembler_With_IPython
  The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python
  ☆31Updated 7 years ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆44Updated this week
• huangnengCSU / NanoSNP
  A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.
  ☆21Updated 2 years ago
• kensung-lab / INSurVeyor
  An insertion caller for Illumina paired-end WGS data.
  ☆23Updated 2 weeks ago
• timplab / nanoNOMe
  nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis
  ☆18Updated 2 years ago
• UMCUGenetics / COLO829_somaticSV
  Scripts and files used in the generation of the COLO829 somatic SV truthset.
  ☆13Updated 3 years ago
• uedaLabR / nanoDoc
  RNA modification detection using Nanopore raw reads with Deep One Class classification
  ☆19Updated 4 years ago
• Kuanhao-Chao / splam
  ✂️ Deep learning-based splice site predictor that improves spliced alignments
  ☆54Updated 6 months ago
• Maggi-Chen / FusionSeeker
  A gene fusion caller for long-read transcriptome sequencing data.
  ☆19Updated last year
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆24Updated last year
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated 11 months ago
• lbcb-sci / rockfish
  ☆10Updated 9 months ago
• mcfrith / dnarrange
  ☆16Updated 7 months ago