JHUCCB / ChineseHanSouthGenome
Gapless, reference-quality Southern Han Chinese genome assembly and annotation
☆12Updated 2 years ago
Alternatives and similar repositories for ChineseHanSouthGenome:
Users that are interested in ChineseHanSouthGenome are comparing it to the libraries listed below
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆17Updated 5 years ago
- Automatically design multiplex PCR primer pairs for diverse templates☆23Updated 7 months ago
- interactive Multi Objective K-mer Analysis☆23Updated last year
- Analyse RNA feature distributions.☆15Updated last month
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆13Updated 3 years ago
- ☆17Updated 2 years ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated 5 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 5 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆25Updated 7 months ago
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆42Updated 3 months ago
- ☆14Updated 9 months ago
- Tumour-only somatic mutation calling using long reads☆25Updated 2 months ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated last year
- ☆13Updated 6 years ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆19Updated last week
- ☆29Updated 7 months ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated 9 months ago
- A gene fusion caller for long-read transcriptome sequencing data.☆17Updated 8 months ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated 8 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated last month
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- ☆29Updated 2 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆15Updated 7 years ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Updated 2 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆29Updated last month
- NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data☆18Updated last month
- Ultra-fast 5' and 3' demultiplexer☆26Updated 8 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago