10XGenomics / scan-rsLinks
Single-cell analysis methods in Rust
☆27Updated 3 months ago
Alternatives and similar repositories for scan-rs
Users that are interested in scan-rs are comparing it to the libraries listed below
Sorting:
- bedtools-like functionality for interval sets in rust☆53Updated 2 months ago
- A high-performance BigWig and BigBed library in Rust☆103Updated 4 months ago
- A Rust library and command line tool for working with genomic ranges and their data.☆100Updated last year
- A tool for projecting genomic alignments to transcriptomic coordinates☆36Updated last year
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆45Updated last month
- Fast FASTQ sample demultiplexing in Rust.☆65Updated 4 months ago
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆69Updated 7 months ago
- an API for intersections of genomic data☆74Updated last week
- A rust framework to make using alevin-fry even simpler☆58Updated 5 months ago
- ☆40Updated last week
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 5 months ago
- SingleCell Nanopore sequencing data analysis☆61Updated 4 months ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆31Updated last year
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆67Updated last month
- ☆39Updated 3 months ago
- An efficient CLI to extract sequences from the SRA☆113Updated 2 months ago
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Updated 10 months ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆22Updated last week
- a lexicographically-based GTF/GFF sorter☆36Updated 5 months ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- long read RNA-seq quantification☆90Updated 2 weeks ago
- Builds a PEP from SRA or GEO accessions☆53Updated 3 months ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆34Updated 8 months ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆69Updated last month
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆49Updated 2 weeks ago
- gia: Genomic Interval Arithmetic☆64Updated last year
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated 2 weeks ago
- Rust wrapper for the next generation (still currently in C++)☆28Updated 2 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago