Single-cell analysis methods in Rust
☆35Nov 4, 2025Updated 7 months ago
Alternatives and similar repositories for scan-rs
Users that are interested in scan-rs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Dec 6, 2024Updated last year
- A rust implementation of STAR☆48Updated this week
- ☆46May 25, 2026Updated 2 weeks ago
- Parallel Construction of Suffix Arrays in Rust☆26May 2, 2025Updated last year
- Mapping sequencing data to De Bruijn graphs, fast☆34Jun 5, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀☆102Nov 24, 2025Updated 6 months ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 4 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆43May 21, 2026Updated 3 weeks ago
- ☆15Nov 30, 2023Updated 2 years ago
- A collection of bioinformatics algorithms☆12Aug 20, 2022Updated 3 years ago
- Nearest neighbor search algorithms including a ball tree and a vantage point tree.☆12Dec 2, 2025Updated 6 months ago
- Drug Resistance Prediction with Reference Graphs☆21Oct 23, 2025Updated 7 months ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- Rust bindings to minimap2 library☆112May 3, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- Benchmarking pairwise aligners☆37Feb 8, 2025Updated last year
- The Isoforms from Single-Cell; Long-read Expression Suite☆40Jan 14, 2025Updated last year
- A Rust-based library for phylogenetic analysis and manipulation☆20May 13, 2026Updated last month
- Universal Single-Cell Genomics Preprocessing package☆49Feb 21, 2026Updated 3 months ago
- Rust implementation of the Haskell Rampart library that determines how intervals relate to each other.☆11Apr 21, 2022Updated 4 years ago
- Rust wrapper for STAR aligner☆21Apr 13, 2026Updated 2 months ago
- Fast approximate string searching☆148Updated this week
- A flexible and fast sgRNA counter from FASTQ Files☆11Dec 29, 2025Updated 5 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Nov 5, 2024Updated last year
- ☆17Jan 6, 2025Updated last year
- ☆23May 29, 2026Updated 2 weeks ago
- ☆12Jan 31, 2023Updated 3 years ago
- A ball-tree implementation for K-NN☆18Jan 8, 2026Updated 5 months ago
- Automatically generates conversions between an enum type and any other type☆11Jan 10, 2023Updated 3 years ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- ☆18Apr 18, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- 10x Genomics Single Cell Analysis☆467Dec 10, 2025Updated 6 months ago
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 2 years ago
- long read RNA-seq quantification☆112Jun 7, 2026Updated last week
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated last year
- Host depletion optimised for clinical metagenomic sequencing applications☆18May 18, 2026Updated 3 weeks ago
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated 10 months ago
- ☆17Jan 6, 2023Updated 3 years ago