10XGenomics / scan-rsLinks
Single-cell analysis methods in Rust
☆29Updated 3 months ago
Alternatives and similar repositories for scan-rs
Users that are interested in scan-rs are comparing it to the libraries listed below
Sorting:
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- A Rust library and command line tool for working with genomic ranges and their data.☆101Updated last year
- bedtools-like functionality for interval sets in rust☆55Updated 6 months ago
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆49Updated last month
- A tool for projecting genomic alignments to transcriptomic coordinates☆37Updated last year
- A high-performance BigWig and BigBed library in Rust☆113Updated 3 months ago
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆70Updated 11 months ago
- A rust framework to make using alevin-fry even simpler☆62Updated 9 months ago
- Builds a PEP from SRA or GEO accessions☆54Updated 2 weeks ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Updated last year
- mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.☆18Updated 2 months ago
- ☆39Updated 7 months ago
- A Python library to visualize and analyze long-read transcriptomes☆65Updated 3 weeks ago
- SingleCell Nanopore sequencing data analysis☆63Updated 8 months ago
- Ultra-fast 5' and 3' demultiplexer☆29Updated last year
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆24Updated last week
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆72Updated last month
- Universal Single-Cell Genomics Preprocessing package☆48Updated last week
- long read RNA-seq quantification☆103Updated last week
- gia: Genomic Interval Arithmetic☆66Updated last year
- The Isoforms from Single-Cell; Long-read Expression Suite☆37Updated last year
- Human reference genome analysis sets☆58Updated 2 years ago
- Full-length transcriptome splicing and mutation analysis☆86Updated last year
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Updated 2 years ago
- an API for intersections of genomic data☆142Updated last week
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆58Updated last year
- T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.☆98Updated last month
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆34Updated 2 years ago
- Gene Fusion Visualiser☆51Updated 3 years ago
- Interactive multiscale visualization for structural variation in human genomes☆71Updated 2 weeks ago