10XGenomics / scan-rsLinks
Single-cell analysis methods in Rust
☆22Updated 6 months ago
Alternatives and similar repositories for scan-rs
Users that are interested in scan-rs are comparing it to the libraries listed below
Sorting:
- bedtools-like functionality for interval sets in rust☆52Updated 9 months ago
- Fast FASTQ sample demultiplexing in Rust.☆62Updated last week
- gia: Genomic Interval Arithmetic☆62Updated 9 months ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆13Updated 6 months ago
- Rust wrapper for the next generation (still currently in C++)☆25Updated this week
- A Rust library and command line tool for working with genomic ranges and their data.☆101Updated last year
- A tool for projecting genomic alignments to transcriptomic coordinates☆36Updated last year
- an API for intersections of genomic data☆75Updated this week
- An efficient CLI to extract sequences from the SRA☆101Updated this week
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆35Updated last week
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆20Updated 3 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated this week
- A high-performance BigWig and BigBed library in Rust☆90Updated last week
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆59Updated 3 weeks ago
- Fast sequencing data quality metrics☆26Updated this week
- ☆39Updated 8 months ago
- Creating alignment plots from bam files☆65Updated this week
- Human reference genome analysis sets☆52Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆62Updated last month
- a lexicographically-based GTF/GFF sorter☆34Updated last month
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆28Updated 3 weeks ago
- ☆22Updated 2 weeks ago
- Immuological gene typing and annotation for genome assembly☆37Updated 2 months ago
- Ultra-fast 5' and 3' demultiplexer☆27Updated last year
- Builds a PEP from SRA or GEO accessions☆49Updated 8 months ago
- ☆21Updated 5 months ago
- bioinformatics toolkit in rust☆89Updated this week
- expressions on VCFs☆85Updated last month
- A program for the analysis of single cell nanopore long read data☆19Updated 2 months ago