Alternatives and similar repositories for scan-rs

Users that are interested in scan-rs are comparing it to the libraries listed below

• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆100Updated last year
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆108Updated last month
• OceanGenomics / mudskipper
  A tool for projecting genomic alignments to transcriptomic coordinates
  ☆37Updated last year
• mritchielab / FLAMES
  A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.
  ☆46Updated last month
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆55Updated 4 months ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆66Updated last week
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆132Updated last week
• COMBINE-lab / oarfish
  long read RNA-seq quantification
  ☆93Updated last month
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆12Updated last year
• mortazavilab / lapa
  Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
  ☆31Updated 2 years ago
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆63Updated 7 months ago
• TrinityCTAT / CTAT-LR-fusion
  fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector
  ☆22Updated 2 months ago
• ulelab / ultraplex
  Ultra-fast 5' and 3' demultiplexer
  ☆28Updated last year
• COMBINE-lab / simpleaf
  A rust framework to make using alevin-fry even simpler
  ☆60Updated 7 months ago
• paulsengroup / hictk
  Blazing fast toolkit to work with .hic and .cool files
  ☆41Updated this week
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆118Updated 3 weeks ago
• huangnengCSU / longcallR
  LongcallR is a SNP caller for single molecule long-read RNA-seq data
  ☆70Updated last week
• shimlab / BLAZE
  SingleCell Nanopore sequencing data analysis
  ☆62Updated 6 months ago
• Genentech / Isosceles
  The Isoforms from Single-Cell; Long-read Expression Suite
  ☆36Updated 11 months ago
• alejandrogzi / gtfsort
  a lexicographically-based GTF/GFF sorter
  ☆35Updated 7 months ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆64Updated last year
• raphael-group / hatchet
  HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…
  ☆70Updated 9 months ago
• regulatory-genomics / precellar
  Universal Single-Cell Genomics Preprocessing package
  ☆45Updated last month
• gagneurlab / absplice
  ☆39Updated 5 months ago
• COMBINE-lab / piscem
  Rust wrapper for the next generation (still currently in C++)
  ☆28Updated 5 months ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆44Updated last week
• sagc-bioinformatics / mgikit
  mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.
  ☆17Updated last week
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆54Updated last year
• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆54Updated last week
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆39Updated last month