Alternatives and similar repositories for crankshaft

Users that are interested in crankshaft are comparing it to the libraries listed below

• stjude-rust-labs / wdl
  Rust crates for working with Workflow Description Language (WDL) documents.
  ☆62Updated 4 months ago
• stjude-rust-labs / sprocket
  A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).
  ☆116Updated last week
• stjude-rust-labs / tes
  A crate for working with the Task Execution Service (TES) specification.
  ☆13Updated 3 weeks ago
• natir / vcf2parquet
  Convert vcf in parquet
  ☆29Updated last year
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆42Updated 3 months ago
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆37Updated 7 months ago
• umccr / htsget-rs
  A server implementation of the htsget protocol for bioinformatics in Rust
  ☆49Updated last week
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆32Updated 2 months ago
• aseyboldt / fastq-rs
  ☆50Updated 3 years ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆35Updated 5 months ago
• varfish-org / mehari
  VEP-like tool for sequence ontology and HGVS annotation of VCF files
  ☆24Updated this week
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆12Updated last year
• jeff-k / bio-seq
  Bit-packed and well-typed biological sequences
  ☆45Updated last week
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated last year
• noamteyssier / paraseq
  A minimal copy fastq and fasta reader built for parallel support and paired end processing
  ☆40Updated 3 weeks ago
• markschl / seqtool
  Fast and flexible tool for reading, modifying and writing biological sequences
  ☆17Updated 3 months ago
• rust-bio / rust-bio-types
  A library of common biomedical types.
  ☆40Updated 9 months ago
• fulcrumgenomics / pybedlite
  Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)
  ☆14Updated 2 months ago
• onecodex / taxonomy
  Python and Rust library for loading, saving, and manipulating taxonomic trees
  ☆49Updated 2 weeks ago
• ArcInstitute / binseq
  A high efficiency binary format for sequencing data
  ☆94Updated last week
• ArcInstitute / bqtools
  A command line utilty for working with BINSEQ files
  ☆35Updated this week
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆55Updated 5 months ago
• sstadick / bam-builder
  Wrapper over rust-htslib for building collections of BAM records for testing.
  ☆10Updated last month
• pepkit / looper
  Modular job submitter for arbitrary pipelines or commands.
  ☆24Updated 2 months ago
• natir / biotest
  Generate random test data for bioinformatics
  ☆27Updated last year
• nh13 / fqme
  ☆21Updated last month
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• dlesl / gb-io
  A Rust library for parsing, writing and manipulating Genbank sequence files
  ☆21Updated 9 months ago
• nextflow-io / nf-hello
  Nextflow plugin implementation skeleton
  ☆11Updated 4 months ago
• arewebioyet / arewebioyet.github.io
  Rust in bioinformatics and computational biology
  ☆19Updated 3 years ago