stjude-rust-labs / crankshaftLinks
A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.
☆38Updated this week
Alternatives and similar repositories for crankshaft
Users that are interested in crankshaft are comparing it to the libraries listed below
Sorting:
- Rust crates for working with Workflow Description Language (WDL) documents.☆50Updated this week
- A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).☆74Updated this week
- Convert vcf in parquet☆26Updated 4 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated 11 months ago
- A high efficiency binary format for sequencing data☆51Updated 2 weeks ago
- Bit-packed and well-typed biological sequences☆33Updated last month
- bedtools-like functionality for interval sets in rust☆52Updated 9 months ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆20Updated this week
- Wrapper over rust-htslib for building collections of BAM records for testing.☆11Updated last year
- Command line utility for working with next-generation sequencing files.☆35Updated last month
- Generate random test data for bioinformatics☆26Updated 11 months ago
- Alignment-based gene expression quantification☆28Updated last month
- A crate for working with genomics chain files.☆11Updated 5 months ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆31Updated 4 months ago
- ☆14Updated 3 years ago
- Fast sequencing data quality metrics☆26Updated last week
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆17Updated last month
- Iterate over minimizers of a DNA sequence☆29Updated 10 months ago
- Rust bindings to minimap2 library☆99Updated last month
- ☆10Updated 2 months ago
- Quality of life improvements for Bioinformatics in Python.☆29Updated this week
- evaluating vcf parsing libraries☆19Updated 3 years ago
- gia: Genomic Interval Arithmetic☆62Updated 9 months ago
- Raw rust bindings for htslib☆9Updated last month
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆15Updated 4 years ago
- Test data for MultiQC.☆22Updated last week
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆13Updated 6 months ago
- ☆22Updated 6 months ago
- Hierarchical binned indexed data store for on-disk genomic data.☆14Updated 4 months ago
- Fasten toolkit, for streaming operations on fastq files☆79Updated last month