stjude-rust-labs / crankshaft
A Rust-based, headless workflow execution engine supporting local, cloud, and HPC.
☆20Updated last week
Related projects ⓘ
Alternatives and complementary repositories for crankshaft
- Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)☆12Updated last month
- ☆22Updated 2 years ago
- The python binding for D4 format☆16Updated 3 years ago
- Index and query k-mer matrices in BGZF☆13Updated 6 years ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆11Updated last year
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- Fast sequencing data quality metrics☆17Updated this week
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated last month
- This project has moved and will no longer be edited here. New link ->☆11Updated 7 years ago
- ☆10Updated last year
- Hidden Markov Model based Copy number caller☆20Updated 3 weeks ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 5 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- BUS format specification☆13Updated 5 years ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆19Updated last month
- Fast interval intersection library☆22Updated this week
- A comprehensive and intelligent clinical phasing tool☆13Updated last year
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆14Updated 3 years ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆16Updated this week
- Variant call adjudication☆16Updated 5 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 weeks ago
- Library for indexing VCF files for random access searches by rsID☆17Updated last year
- ☆14Updated 2 years ago
- ☆9Updated 2 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- Container class to represent genomic locations and support genomic analysis☆17Updated this week
- Scalable and High Performance Variant Calling on Cluster Environments☆10Updated 2 years ago
- Iterate over minimizers of a DNA sequence☆26Updated 4 months ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆14Updated last month
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 5 months ago