Alternatives and similar repositories for crankshaft:

Users that are interested in crankshaft are comparing it to the libraries listed below

• stjude-rust-labs / sprocket
  A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).
  ☆42Updated this week
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆30Updated last month
• natir / vcf2parquet
  Convert vcf in parquet
  ☆24Updated 3 weeks ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated 7 months ago
• kcleal / superintervals
  Fast interval intersection library
  ☆35Updated 3 weeks ago
• 10XGenomics / rust-bwa
  Rust wrapper of the BWA C API
  ☆18Updated 3 years ago
• shenwei356 / strobemers
  A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
  ☆14Updated 3 years ago
• sstadick / bam-builder
  Wrapper over rust-htslib for building collections of BAM records for testing.
  ☆11Updated last year
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆13Updated 2 months ago
• annalam / seqkit
  Toolkit for manipulating FASTA and SAM files
  ☆17Updated 11 months ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆27Updated 7 months ago
• hoffmangroup / acidbio
  ☆14Updated 2 years ago
• brentp / pbr
  drunk on perbase pileups and lua expressions
  ☆17Updated last year
• varfish-org / mehari
  VEP-like tool for sequence ontology and HGVS annotation of VCF files
  ☆17Updated this week
• vsbuffalo / hgindex
  Hierarchical binned indexed data store for on-disk genomic data.
  ☆14Updated last month
• fulcrumgenomics / pybedlite
  Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)
  ☆14Updated 3 weeks ago
• nh13 / fqme
  ☆22Updated 2 months ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆20Updated last week
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆27Updated this week
• stjude-rust-labs / wdl
  Rust crates for working with Workflow Description Language (WDL) documents.
  ☆34Updated this week
• sstadick / rumi
  Rust UMI Directional Adjacency Deduplicator
  ☆14Updated 5 years ago
• 38 / pyd4
  The python binding for D4 format
  ☆16Updated 3 years ago
• natir / biotest
  Generate random test data for bioinformatics
  ☆25Updated 8 months ago
• cschin / wavefront-aln
  A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring
  ☆15Updated last year
• jdidion / pairwise-alignment
  Catalogue of pairwise alignment algorithms and benchmarks
  ☆25Updated 6 months ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆49Updated 6 months ago
• arewebioyet / arewebioyet.github.io
  Rust in bioinformatics and computational biology
  ☆20Updated 2 years ago
• fulcrumgenomics / nf-dotenv
  Automatically source dotenv files into your Nextflow scope
  ☆9Updated 3 weeks ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆61Updated 5 months ago
• stjude-rust-labs / chainfile
  A crate for working with genomics chain files.
  ☆10Updated last month