biobakery / hallaLinks
☆15Updated last year
Alternatives and similar repositories for halla
Users that are interested in halla are comparing it to the libraries listed below
Sorting:
- Batch effects removal for microbiome data via conditional quantile regression☆31Updated 3 years ago
- This is the supplementary code for CRC-multi-kingdom☆17Updated 4 years ago
- ☆38Updated 2 years ago
- Metagenomics microbial abundance quantification☆28Updated 3 years ago
- Convert a Genbank flat file to an NCBI ptt file☆17Updated 2 years ago
- A shiny package for microbiome functional enrichment analysis☆38Updated last week
- OPAL: Open-community Profiling Assessment tooL☆30Updated 11 months ago
- ☆33Updated 5 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated last month
- gutSMASH☆55Updated 2 months ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆34Updated 4 years ago
- A script to make downloading of SRA/GEO data easier☆31Updated 2 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 7 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- A general metagenomics data mining system focus on robust microbiome research☆58Updated last year
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- Python bindings for the TaxonKit library☆41Updated 2 weeks ago
- Analysis framework for integrating gut microbiome and host gene expression data☆34Updated 3 years ago
- Metagenome analysis using the Kraken software suite☆35Updated 3 years ago
- Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publicatio…☆12Updated 2 years ago
- Set of utilities on sequences and BAM files☆26Updated 4 years ago
- A snakemake workflow for metagenomic projects☆15Updated 2 years ago
- pathway based data integration and visualization☆42Updated 8 months ago
- A reference viral database (RVDB)☆26Updated 7 years ago
- ☆13Updated last year
- The Mouse Gastrointestinal Bacteria Catalogue☆15Updated 3 years ago
- ☆32Updated 2 years ago
- MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.☆36Updated 8 months ago
- ☆58Updated last year
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago