☆20Jul 22, 2024Updated last year
Alternatives and similar repositories for halla
Users that are interested in halla are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Jul 3, 2021Updated 4 years ago
- ☆25Oct 9, 2020Updated 5 years ago
- A flexible and fast sgRNA counter from FASTQ Files☆11Dec 29, 2025Updated 3 months ago
- ☆13Jun 6, 2024Updated last year
- Drug Resistance Prediction with Reference Graphs☆21Oct 23, 2025Updated 5 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Python bindings for SingleR☆15Jan 6, 2026Updated 3 months ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆31Mar 27, 2026Updated 2 weeks ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated 2 years ago
- a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs☆12Oct 4, 2021Updated 4 years ago
- The viral taxonomic assignment pipeline☆43Feb 5, 2026Updated 2 months ago
- Metagenomics microbial abundance quantification☆28Sep 22, 2022Updated 3 years ago
- Code used for muti cellular factor analysis☆16Dec 13, 2023Updated 2 years ago
- Run_dbcan V5☆55Mar 16, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A snakemake workflow for metagenomic projects☆15Feb 16, 2023Updated 3 years ago
- ☆24Mar 30, 2026Updated 2 weeks ago
- Model-based Integration of Metabolite Observations and Species Abundances☆24Feb 21, 2020Updated 6 years ago
- Viral protein family functional prediction using protein language models☆23Jan 6, 2026Updated 3 months ago
- convert .kfb format whole slide images to .svs format image for further processing☆17Sep 19, 2020Updated 5 years ago
- code repo for mobileOG-db☆46Nov 6, 2025Updated 5 months ago
- ☆15Jan 12, 2026Updated 3 months ago
- A fast terminal-based viewer and command-line toolkit for molecular sequences (DNA, AA). View, translate, convert (to FASTA), and combine…☆38Mar 10, 2026Updated last month
- Convert genbank files to a swath of other formats☆30Mar 3, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆19Jan 14, 2024Updated 2 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Feb 3, 2020Updated 6 years ago
- RNAcode - Detecting protein coding genes in multiple sequence alignment☆25Aug 22, 2024Updated last year
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 3 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆21Mar 25, 2022Updated 4 years ago
- ☆15Aug 15, 2021Updated 4 years ago
- ☆14Jul 4, 2023Updated 2 years ago
- Pan-genome Analysis☆12May 4, 2025Updated 11 months ago
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆16May 14, 2023Updated 2 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 4 months ago
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 7 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆42Sep 3, 2024Updated last year
- Python3 wrapper for parallelized gene prediction using Prodigal☆11Mar 3, 2023Updated 3 years ago
- ☆78Oct 16, 2024Updated last year
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Nov 5, 2025Updated 5 months ago
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Nov 3, 2021Updated 4 years ago