Alternatives and similar repositories for segger_dev:

Users that are interested in segger_dev are comparing it to the libraries listed below

• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆90Updated 2 weeks ago
• Teichlab / bin2cell
  Join subcellular Visium HD bins into cells
  ☆96Updated 4 months ago
• gustaveroussy / sopa
  Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…
  ☆189Updated last week
• saeyslab / harpy
  Single-cell spatial proteomics analysis that makes you happy!
  ☆27Updated this week
• plevritis-lab / CELESTA
  Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …
  ☆35Updated last year
• CSOgroup / cellcharter
  A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.
  ☆119Updated last week
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆78Updated last month
• yuqiyuqitan / SPACEc
  ☆35Updated this week
• haniffalab / webatlas-pipeline
  A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas
  ☆61Updated last week
• HiDiHlabs / ssam
  ☆28Updated 6 months ago
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆41Updated last week
• Moldia / Xenium_benchmarking
  Code used to benchmark Xenium
  ☆57Updated 10 months ago
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆53Updated last week
• YosefLab / scib-metrics
  Accelerated, Python-only, single-cell integration benchmarking metrics
  ☆58Updated this week
• prabhakarlab / Banksy
  BANKSY: spatial clustering
  ☆105Updated last month
• scverse / spatialdata-io
  ☆60Updated 2 weeks ago
• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆100Updated 2 weeks ago
• JEFworks-Lab / STalign
  Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
  ☆77Updated last year
• zcang / COMMOT
  ☆115Updated last year
• digitalcytometry / cytospace
  CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
  ☆127Updated 2 months ago
• fish-quant / ComSeg
  comseg
  ☆19Updated 3 months ago
• wanglab-broad / ClusterMap
  ClusterMap for multi-scale clustering analysis of spatial gene expression
  ☆45Updated 9 months ago
• dcjones / proseg
  Probabilistic cell segmentation for in situ spatial transcriptomics
  ☆74Updated this week
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆21Updated 9 months ago
• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆87Updated last month
• prabhakarlab / Banksy_py
  ☆47Updated 4 months ago
• theislab / spatial_scog_workshop_2022
  Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022
  ☆53Updated 2 years ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆36Updated 5 months ago
• SydneyBioX / BIDCell
  Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data
  ☆42Updated 9 months ago
• seqscope / ficture
  ☆34Updated this week