Alternatives and similar repositories for task_batch_integration

Users that are interested in task_batch_integration are comparing it to the libraries listed below

• jkobject / scDataLoader
  a dataloader to work with large single cell datasets from lamindb
  ☆34Updated this week
• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆117Updated 3 weeks ago
• lilab-bcb / harmony-pytorch
  ☆62Updated 8 months ago
• cellarium-ai / cellarium-ml
  Distributed single-cell data analysis.
  ☆35Updated last week
• const-ae / pyLemur
  A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
  ☆28Updated last year
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆62Updated last week
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆95Updated last year
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆52Updated last year
• jkobject / scPRINT
  single cell foundation model for Gene network inference and more
  ☆19Updated 2 months ago
• gagneurlab / scooby
  scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.
  ☆54Updated 3 months ago
• NygenAnalytics / CyteType
  Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data
  ☆102Updated 3 weeks ago
• EngreitzLab / scE2G
  Pipeline to run scE2G
  ☆32Updated this week
• scverse / mudata
  Multimodal Data (.h5mu) implementation for Python
  ☆107Updated this week
• kmayerb / tcrdist3
  flexible CDR based distance metrics
  ☆69Updated last month
• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆26Updated 3 years ago
• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆57Updated last year
• mossjacob / pyslingshot
  Python implementation of the Slingshot pseudotime algorithm
  ☆69Updated 3 months ago
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆33Updated 2 years ago
• aertslab / CREsted
  CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…
  ☆57Updated this week
• jmschrei / dragonnfruit
  A method for analyzing scATAC-seq experiments.
  ☆34Updated 7 months ago
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆59Updated this week
• noamteyssier / adpbulk
  pseudobulking on an AnnData object
  ☆34Updated 10 months ago
• theislab / scTab
  ☆62Updated last year
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆67Updated 7 months ago
• saezlab / progeny-py
  PROGENY Python implementation
  ☆12Updated 3 years ago
• rs239 / velorama
  Gene regulatory network inference for RNA velocity and pseudotime data
  ☆28Updated 3 months ago
• saezlab / dorothea-py
  Dorothea package in Python
  ☆11Updated 3 years ago
• SchubertLab / mvTCR
  ☆56Updated last year
• jmschrei / tfmodisco-lite
  A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.
  ☆87Updated 4 months ago
• Novartis / cellxgene-gateway
  Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…
  ☆67Updated 2 months ago