regulatory-genomics / precellarView external linksLinks
Universal Single-Cell Genomics Preprocessing package
☆48Feb 2, 2026Updated last week
Alternatives and similar repositories for precellar
Users that are interested in precellar are comparing it to the libraries listed below
Sorting:
- R and MATLAB scripts for MAGICAL☆11Jun 26, 2024Updated last year
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆21Aug 22, 2025Updated 5 months ago
- Code used for muti cellular factor analysis☆16Dec 13, 2023Updated 2 years ago
- Single-cell epigenomics analysis tools☆308Feb 1, 2026Updated last week
- Single-cell analysis methods in Rust☆29Nov 4, 2025Updated 3 months ago
- ☆38Jan 19, 2026Updated 3 weeks ago
- Blazing-Fast Bioinformatic Operations on Python DataFrames☆144Feb 7, 2026Updated last week
- A method for analyzing scATAC-seq experiments.☆34Jun 20, 2025Updated 7 months ago
- ☆40Feb 1, 2026Updated last week
- Read RDS files, in Python☆25Jan 26, 2026Updated 2 weeks ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆22Jul 10, 2024Updated last year
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Jan 22, 2025Updated last year
- An end-to-end computational pipeline for large Perturb-seq screens☆15Apr 25, 2025Updated 9 months ago
- ☆12May 29, 2024Updated last year
- Adata Viewer: Head/Less/Shape h5ad file in terminal☆12Mar 19, 2025Updated 10 months ago
- Python bindings for SingleR☆14Jan 6, 2026Updated last month
- LoopPredictor: Predicting unknown enhancer-mediated genome topology by an ensemble machine learning model☆14Jun 18, 2021Updated 4 years ago
- ☆32Oct 4, 2024Updated last year
- Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀☆87Nov 24, 2025Updated 2 months ago
- Scripts for building computational models of gene regulation with tensorflow☆11Jan 21, 2020Updated 6 years ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆28Nov 6, 2025Updated 3 months ago
- Automatically annotate cell types, consistently across samples.☆18Updated this week
- A python package for chromVAR☆33May 1, 2023Updated 2 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Feb 4, 2023Updated 3 years ago
- Matplotlib style for scientific publications☆14Jan 19, 2026Updated 3 weeks ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆140Feb 14, 2025Updated last year
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Jul 11, 2024Updated last year
- ☆15Nov 24, 2025Updated 2 months ago
- This repository contains codes used for the human fetal limb cell atlas.☆17Jan 28, 2025Updated last year
- A high-performance BigWig and BigBed library in Rust☆113Oct 21, 2025Updated 3 months ago
- ☆19Feb 15, 2025Updated 11 months ago
- Fast sequence distance estimates☆26Jan 29, 2026Updated 2 weeks ago
- A high efficiency binary format for sequencing data☆95Jan 24, 2026Updated 3 weeks ago
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆41Dec 18, 2025Updated last month
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15May 1, 2025Updated 9 months ago
- ☆23Sep 29, 2025Updated 4 months ago
- ANS_signature_scoring: A gene expression signature scoring Python package.☆16Jan 18, 2026Updated 3 weeks ago
- ☆20Jan 10, 2025Updated last year
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆38Jul 11, 2025Updated 7 months ago