regulatory-genomics / precellarLinks
☆29Updated 2 weeks ago
Alternatives and similar repositories for precellar
Users that are interested in precellar are comparing it to the libraries listed below
Sorting:
- Builds a PEP from SRA or GEO accessions☆52Updated this week
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated last month
- Tools for working with BUS files☆100Updated last month
- ☆44Updated last week
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆90Updated this week
- Genomic coordinates of problematic genomic regions as GRanges☆40Updated 7 months ago
- ☆39Updated last week
- Tools for correcting single cell barcodes for various scATAC-seq techniques and creating fragment files and spltting BAM files per cluste…☆27Updated 2 weeks ago
- Single-cell Hi-C data analysis toolbox☆27Updated 3 years ago
- splicing and feature maps for RBPs☆25Updated 3 years ago
- Extract data quickly from Juicebox via straw☆69Updated 3 months ago
- ☆17Updated last year
- Transcription Factor Enrichment Analysis☆34Updated last week
- IDR☆31Updated 2 years ago
- A single cell transcriptomics pipeline for QC, integration and making the data presentable☆69Updated this week
- Molecular interactions inference from single-cell multi-omics data☆27Updated last month
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆63Updated 2 years ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆32Updated 3 months ago
- Toolkit for single-cell DNA methylation analysis.☆42Updated 3 weeks ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆69Updated last year
- polyApipe☆17Updated 5 months ago
- SingleCell Nanopore sequencing data analysis☆60Updated last month
- scSNV Mapping tool for 10X Single Cell Data☆25Updated last year
- Convert 10x BAM files to the original FASTQs compatible with 10x pipelines☆64Updated 3 months ago
- Detection and couting alternative TSS in single cells☆15Updated last year
- simplified cellranger for long-read data☆19Updated 2 months ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated last year
- binned motif enrichment analysis and visualisation☆40Updated 2 weeks ago
- RiboPlotR package for Ribo-plot☆15Updated last month
- Epimap processing and analysis code repository☆33Updated 2 years ago