COMBINE-lab / pyroeLinks
☆16Updated last year
Alternatives and similar repositories for pyroe
Users that are interested in pyroe are comparing it to the libraries listed below
Sorting:
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 4 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Updated 4 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- Container class to represent genomic locations and support genomic analysis☆27Updated this week
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated 2 years ago
- ☆11Updated 2 years ago
- A rust framework to make using alevin-fry even simpler☆61Updated 8 months ago
- Universal RObust Peak Annotator☆16Updated 2 years ago
- The Monod package fits CME models to sequencing data.☆33Updated last week
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 6 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 9 months ago
- ☆23Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆31Updated 10 months ago
- Creates a target specific exome_full192.coverage.txt file required by MutSig☆21Updated 4 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- kallisto index tag extractor☆20Updated 6 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Updated 5 years ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- Single cell interactive plotting tools☆24Updated 5 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 4 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆41Updated 2 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- ☆12Updated 2 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- scSNV Mapping tool for 10X Single Cell Data☆25Updated last month
- Bayesian mixture models for estimating and clustering cancer cell fractions☆24Updated 3 years ago
- Create QC and summary reports for Alevin output☆31Updated last month