Alternatives and similar repositories for pyroe:

Users that are interested in pyroe are comparing it to the libraries listed below

• bioturing / hera-t
  Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol
  ☆17Updated 3 years ago
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆31Updated 4 years ago
• satijalab / scChromHMM
  🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…
  ☆26Updated 3 years ago
• pachterlab / MBGBLHGP_2019
  Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"
  ☆23Updated 4 years ago
• czbiohub-sf / molecular-cross-validation
  Calibrate and compare methods for denoising single-cell RNA-seq data
  ☆2Updated 4 years ago
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆27Updated last year
• BiocPy / GenomicRanges
  Container class to represent genomic locations and support genomic analysis
  ☆18Updated this week
• yuifu / millefy
  Millefy: Genome browser-like visualization of single-cell RNA-seq dataset
  ☆28Updated 5 years ago
• const-ae / transformGamPoi-Paper
  ☆26Updated last year
• koesterlab / microphaser
  ☆12Updated last year
• hemberg-lab / MicroExonator
  Snakemake pipeline for microexon discovery and quantification
  ☆20Updated last month
• lamortenera / epicseg
  Chromatin segmentation in R
  ☆19Updated 7 years ago
• klarman-cell-observatory / scPlot
  Single cell interactive plotting tools
  ☆23Updated 4 years ago
• morrislab / pairtree
  Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…
  ☆37Updated 10 months ago
• pachterlab / kite
  kallisto index tag extractor
  ☆20Updated 5 years ago
• csoneson / alevinQC
  Create QC and summary reports for Alevin output
  ☆31Updated last month
• jacobhepkema / scover
  scover
  ☆23Updated last year
• yufengwudcs / ScisTree
  Cell tree inference and genotype calling from noisy single cell data
  ☆9Updated 3 months ago
• DeplanckeLab / ChromatinHD
  High-definition modeling of chromatin + transcriptomics data
  ☆21Updated 3 months ago
• klarman-cell-observatory / perturbseq
  Perturb-seq analysis package
  ☆14Updated 9 months ago
• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆46Updated 5 months ago
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆20Updated last week
• ncbi / scPopCorn
  A python tool to do comparative analysis of mulitple single cell datasets.
  ☆21Updated 5 years ago
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 5 years ago
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆34Updated 3 years ago
• Oshlack / Slinker
  Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.
  ☆19Updated 2 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 2 years ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆33Updated this week
• databio / pararead
  Simplifies parallel processing of DNA sequencing reads
  ☆9Updated 4 months ago
• GWW / scsnv
  scSNV Mapping tool for 10X Single Cell Data
  ☆24Updated 10 months ago