COMBINE-lab / pyroe
☆16Updated 4 months ago
Alternatives and similar repositories for pyroe:
Users that are interested in pyroe are comparing it to the libraries listed below
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆17Updated 3 years ago
- Container class to represent genomic locations and support genomic analysis☆21Updated last week
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 4 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 9 months ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 4 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- Builds a PEP from SRA or GEO accessions☆49Updated 7 months ago
- Differential ATAC-seq toolkit☆27Updated last year
- Bedfile perturbation tool☆17Updated last year
- ☆12Updated last year
- Simplifies parallel processing of DNA sequencing reads☆9Updated 7 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Create QC and summary reports for Alevin output☆32Updated 2 weeks ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 3 months ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- kallisto index tag extractor☆20Updated 5 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆28Updated last year
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated last month
- Mean Alterations Using Discrete Expression☆14Updated last year
- scSNV Mapping tool for 10X Single Cell Data☆25Updated last year
- interactive plots for differential expression analysis☆32Updated last month
- scover☆23Updated last year
- Single cell interactive plotting tools☆23Updated 4 years ago
- High-definition modeling of chromatin + transcriptomics data☆23Updated 3 weeks ago